DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and Tlr4

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_067272.1 Gene:Tlr4 / 21898 MGIID:96824 Length:835 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380
LRR_RI 180..>383 CDD:238064
leucine-rich repeat 183..204 CDD:275380
LRR_8 203..263 CDD:290566
leucine-rich repeat 205..228 CDD:275380
leucine-rich repeat 229..252 CDD:275380
LRR_8 252..311 CDD:290566
leucine-rich repeat 253..276 CDD:275380
leucine-rich repeat 277..300 CDD:275380
LRR_8 299..359 CDD:290566
leucine-rich repeat 301..324 CDD:275380
leucine-rich repeat 325..348 CDD:275380
LRR_RI 327..567 CDD:238064
leucine-rich repeat 349..371 CDD:275380
LRR_8 370..425 CDD:290566
leucine-rich repeat 372..393 CDD:275380
leucine-rich repeat 394..415 CDD:275380
leucine-rich repeat 418..486 CDD:275380
leucine-rich repeat 441..464 CDD:275378
LRR_8 487..545 CDD:290566
leucine-rich repeat 487..510 CDD:275380
leucine-rich repeat 511..534 CDD:275380
LRR_8 533..589 CDD:290566
leucine-rich repeat 535..558 CDD:275380
leucine-rich repeat 559..580 CDD:275380
7tm_4 764..>892 CDD:304433
7tm_1 770..1017 CDD:278431
Tlr4NP_067272.1 LRR_8 53..113 CDD:290566
LRR 1 54..75
leucine-rich repeat 58..78 CDD:275380
LRR 2 78..99
leucine-rich repeat 79..102 CDD:275380
LRR 3 102..123
leucine-rich repeat 103..126 CDD:275380
LRR 4 126..147
leucine-rich repeat 127..150 CDD:275380
LRR_8 150..214 CDD:290566
LRR 5 150..171
leucine-rich repeat 151..175 CDD:275380
LRR 6 175..198
leucine-rich repeat 176..204 CDD:275380
LRR 7 204..224
leucine-rich repeat 205..226 CDD:275380
LRR 8 226..247
LRR 9 248..269
LRR 10 329..349
leucine-rich repeat 331..350 CDD:275380
LRR 11 350..370
leucine-rich repeat 351..372 CDD:275380
LRR_RI <369..555 CDD:238064
LRR 12 372..392
leucine-rich repeat 373..398 CDD:275380
LRR 13 398..420
leucine-rich repeat 399..421 CDD:275380
LRR 14 421..442
leucine-rich repeat 422..446 CDD:275380
LRR 15 446..467
leucine-rich repeat 447..470 CDD:275380
LRR 16 470..490
leucine-rich repeat 471..495 CDD:275380
LRR_8 494..554 CDD:290566
LRR 17 495..516
leucine-rich repeat 496..519 CDD:275380
LRR 18 519..540
leucine-rich repeat 520..543 CDD:275380
LRR 19 543..564
Interaction with SCIMP. /evidence=ECO:0000269|PubMed:28098138 670..835
TIR 672..813 CDD:214587
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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