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Protein Alignment rk and ZK546.2

DIOPT Version :9

Sequence 1:	NP_476702.1	Gene:	rk / 34819	FlyBaseID:	FBgn0003255	Length:	1360	Species:	Drosophila melanogaster
Sequence 2:	NP_740983.2	Gene:	ZK546.2 / 173855	WormBaseID:	WBGene00022759	Length:	485	Species:	Caenorhabditis elegans

Alignment Length:	475	Identity:	116/475 - (24%)
Similarity:	200/475 - (42%)	Gaps:	85/475 - (17%)

- Green bases have known domain annotations that are detailed below.

  Fly   227 AKLKRLSLQNCGLKSLPPQSFQGLAQLTSLQLNGNALVSLDGDCLGHLQKLRTLRLEGNLFYRIP 291
            :|.:.|||:...|..: |...:.|..|..|.::.|.|..|. ..:|.:..|:.|.|..|....:|
Worm    18 SKTRVLSLKESALHRI-PDDVKDLTMLKHLDMSINYLTQLP-PFIGSMSHLKNLNLSRNQLESLP 80

  Fly   292 --TNALAGLRTLEALNLGSNLLTIINDED-----------------FP----RMPNLIVLLLKRN 333
              .|:||   .||.||:..|.||.:.|..                 ||    :.|||...||..|
Worm    81 LEINSLA---CLEVLNVSQNKLTELPDLSQCVSLKTVEAIENQFIIFPAGVCKCPNLETCLLTEN 142

  Fly   334 QIMKISAGALKNLTALKVLELDDNLISSLPEGLSKLSQLQELSITSNRLRWINDTEL-------P 391
            :|.|: ...:.:|.|:.|:...:.|:|.....|.:..:|:.:::..|:|   |..|:       |
Worm   143 RIEKL-PDEIHSLRAISVILNKNRLLSLNTANLLRCERLRAVNVDDNQL---NRDEIEQFLVNAP 203

  Fly   392 RSMQM-LDMRANPLSTISPGAFRGMSKLRKLILSDVRTL--RSFP-------ELEACHALEILKL 446
            |.::: .:...:.:.|.........|...|.|..:.|.:  :|.|       .||......||:|
Worm   204 REIRISFERNVSQMHTTDLQEMGNDSSKTKSIGDNARKIIGKSGPSTSTVNKHLEMASKSRILQL 268

  Fly   447 DRAGIQEVPANLCRQTPRLKSLELKTNSLKRIP-NLSSCRDLRLLDLSSNQIEKIQGKPFNGLKQ 510
            ...|:::||..:......|::|||..|.::.|| .:.....|:.|.|::|.:|.:..: ...:|:
Worm   269 KGTGLKKVPDEIEPLADVLRNLELSENKIREIPIFIGQFSQLKQLHLANNCLEFLPDE-LGSMKK 332

  Fly   511 LNDLLLSYNRIKALPQDAFQGIPKLQLLDLEGNEISYIHKEAFSGFTALEDLNLGNNIFPELPES 575
            |..|.|:.|::|||| |...|...|:.:||..| :..:...|..|...|:.|||..|....||:.
Worm   333 LEILNLAGNKLKALP-DTIVGCTDLKTIDLSSN-VFTVFPVAVIGCLQLDILNLNGNQIESLPDD 395

  Fly   576 GLRALLHLK----TFNNPKLREFPPPDTFPRIQTLILSYAYHCCAFLPLVAMSSQKKTSQVQEAV 636
                :.:||    :.|..:|....|.:                      :|.:::.:|.::.|..
Worm   396 ----ISNLKVIELSLNQNRLSSLNPSN----------------------LAKTTRLRTLRLDENC 434

  Fly   637 LFPSDAEFDMTLWNNSMMNI 656
            |  ..:||...|..:|.:::
Worm   435 L--EKSEFTRDLLESSTISV 452

Known Domains:

Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.