DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and Tlr8

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_573475.2 Gene:Tlr8 / 170744 MGIID:2176887 Length:1032 Species:Mus musculus


Alignment Length:691 Identity:179/691 - (25%)
Similarity:265/691 - (38%) Gaps:179/691 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly    51 QEPYVHLQHL------QQQQQQNPQTVQQLSQITVNRTSKSASVTPTGIRENVM--LPSADPEKE 107
            :|.:..||:|      ...:||:|...:....||........::|...:.:|.:  :|:..||. 
Mouse    80 KESFQKLQNLTKIDLNHNAKQQHPNENKNGMNITEGALLSLRNLTVLLLEDNQLYTIPAGLPES- 143

  Fly   108 AQILYEKSLQEYHGSQLSTASTATDVIAGKRTLHSICERWLQKHCH--CTGS------------- 157
               |.|.||.:.:..|::..:|     .|.|.|..:...|   :|:  |..:             
Mouse   144 ---LKELSLIQNNIFQVTKNNT-----FGLRNLERLYLGW---NCYFKCNQTFKVEDGAFKNLIH 197

  Fly   158 LEVLRLSCRGIGILAVPVNLPNEVVVLDLGNNNLTKLEANSFFMAPNLEELTLSD---------- 212
            |:||.||..  .:..||..||:.:..|.|.|..:..:....|   ..||.|||.|          
Mouse   198 LKVLSLSFN--NLFYVPPKLPSSLRKLFLSNAKIMNITQEDF---KGLENLTLLDLSGNCPRCYN 257

  Fly   213 ----------NSIINMDPNAFYGLAKLKRLSLQNCGLKSLPPQSFQGLAQLTSLQLNGNALVS-- 265
                      ||.|::.|.||..|.:|..|:|.:..|:::|...|:.|:.|..|.|..|.||.  
Mouse   258 APFPCTPCKENSSIHIHPLAFQSLTQLLYLNLSSTSLRTIPSTWFENLSNLKELHLEFNYLVQEI 322

  Fly   266 LDGDCLGHLQKLRTLRLEGNLFYR-------IPTNALAGLRTLEALNLGSNLLTIINDEDFPR-- 321
            ..|..|..|..|:.|.|..|..|:       |.:| .:.||:|:.|:|...:...:..:.|..  
Mouse   323 ASGAFLTKLPSLQILDLSFNFQYKEYLQFINISSN-FSKLRSLKKLHLRGYVFRELKKKHFEHLQ 386

  Fly   322 -MPNLIVLLLKRNQIMKISAGALKNLTALKVLELDDNLISSLPEGLSKLSQLQELSITSNRLR-- 383
             :|||..:.|..|.|.||...|.:|.:.|.|:.|..|.|:|:.:|       .:.|...||||  
Mouse   387 SLPNLATINLGINFIEKIDFKAFQNFSKLDVIYLSGNRIASVLDG-------TDYSSWRNRLRKP 444

  Fly   384 -WINDTELPRSM------------------QMLDMRANPLSTISPGAFRGMSKLRKLILS----- 424
             ..:|.|....:                  :.||:..|.:..|....|.|...:..|.||     
Mouse   445 LSTDDDEFDPHVNFYHSTKPLIKPQCTAYGKALDLSLNNIFIIGKSQFEGFQDIACLNLSFNANT 509

  Fly   425 ------------------------DVRTLRSFPELEACHALEILKLD-------------RAGIQ 452
                                    |.....:|.:|   |.||:|.|.             |.|..
Mouse   510 QVFNGTEFSSMPHIKYLDLTNNRLDFDDNNAFSDL---HDLEVLDLSHNAHYFSIAGVTHRLGFI 571

  Fly   453 EVPANL------------CRQTPRLKSLELKT-----NSLKRIPN---------LSSCRDLRLLD 491
            :...||            ..:...|||:.||.     |.|.|:.|         ..|.::|..||
Mouse   572 QNLINLRVLNLSHNGIYTLTEESELKSISLKELVFSGNRLDRLWNANDGKYWSIFKSLQNLIRLD 636

  Fly   492 LSSNQIEKIQGKPFNGLKQ-LNDLLLSYNRIKALPQDAFQGIPKLQLLDLEGNEISYIHKEAFSG 555
            ||.|.:::|....|..|.| |.:||:|.|:::.......|..|.|.||||..||: |......|.
Mouse   637 LSYNNLQQIPNGAFLNLPQSLQELLISGNKLRFFNWTLLQYFPHLHLLDLSRNEL-YFLPNCLSK 700

  Fly   556 FT-ALEDLNLGNNIFPELPE---SGLRALLHLK-TFNNPKL 591
            |. :||.|.|.:|.|..||.   |..|.|:||. :||..|:
Mouse   701 FAHSLETLLLSHNHFSHLPSGFLSEARNLVHLDLSFNTIKM 741

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 8/20 (40%)
LRR_RI 180..>383 CDD:238064 66/234 (28%)
leucine-rich repeat 183..204 CDD:275380 4/20 (20%)
LRR_8 203..263 CDD:290566 24/79 (30%)
leucine-rich repeat 205..228 CDD:275380 13/42 (31%)
leucine-rich repeat 229..252 CDD:275380 7/22 (32%)
LRR_8 252..311 CDD:290566 21/67 (31%)
leucine-rich repeat 253..276 CDD:275380 9/24 (38%)
leucine-rich repeat 277..300 CDD:275380 8/29 (28%)
LRR_8 299..359 CDD:290566 19/62 (31%)
leucine-rich repeat 301..324 CDD:275380 4/25 (16%)
leucine-rich repeat 325..348 CDD:275380 8/22 (36%)
LRR_RI 327..567 CDD:238064 83/330 (25%)
leucine-rich repeat 349..371 CDD:275380 7/21 (33%)
LRR_8 370..425 CDD:290566 16/104 (15%)
leucine-rich repeat 372..393 CDD:275380 7/23 (30%)
leucine-rich repeat 394..415 CDD:275380 5/38 (13%)
leucine-rich repeat 418..486 CDD:275380 25/135 (19%)
leucine-rich repeat 441..464 CDD:275378 8/47 (17%)
LRR_8 487..545 CDD:290566 23/58 (40%)
leucine-rich repeat 487..510 CDD:275380 9/22 (41%)
leucine-rich repeat 511..534 CDD:275380 6/22 (27%)
LRR_8 533..589 CDD:290566 26/60 (43%)
leucine-rich repeat 535..558 CDD:275380 10/23 (43%)
leucine-rich repeat 559..580 CDD:275380 10/23 (43%)
7tm_4 764..>892 CDD:304433
7tm_1 770..1017 CDD:278431
Tlr8NP_573475.2 LRR_RI 32..252 CDD:238064 45/188 (24%)
LRR 1 41..61
LRR 2 62..85 1/4 (25%)
LRR_8 65..133 CDD:290566 11/52 (21%)
leucine-rich repeat 65..88 CDD:275380 2/7 (29%)
LRR 3 87..109 5/21 (24%)
leucine-rich repeat 89..122 CDD:275380 6/32 (19%)
LRR 4 120..143 4/22 (18%)
leucine-rich repeat 123..143 CDD:275380 4/19 (21%)
leucine-rich repeat 144..167 CDD:275380 7/27 (26%)
LRR 5 145..165 5/24 (21%)
LRR_8 166..251 CDD:290566 24/92 (26%)
LRR 6 166..194 5/30 (17%)
leucine-rich repeat 168..197 CDD:275380 4/31 (13%)
LRR 7 195..218 9/24 (38%)
leucine-rich repeat 198..218 CDD:275380 9/21 (43%)
leucine-rich repeat 219..242 CDD:275380 5/25 (20%)
LRR 8 220..239 4/21 (19%)
LRR 9 240..267 6/26 (23%)
leucine-rich repeat 243..283 CDD:275380 11/39 (28%)
LRR_RI <277..>428 CDD:238064 47/151 (31%)
LRR 10 281..304 7/22 (32%)
LRR_8 282..342 CDD:290566 19/59 (32%)
leucine-rich repeat 284..307 CDD:275380 7/22 (32%)
LRR 11 306..329 7/22 (32%)
leucine-rich repeat 308..327 CDD:275380 7/18 (39%)
LRR 12 331..360 8/29 (28%)
leucine-rich repeat 334..363 CDD:275380 8/29 (28%)
LRR 13 361..384 6/22 (27%)
LRR_8 362..425 CDD:290566 19/62 (31%)
leucine-rich repeat 364..390 CDD:275380 4/25 (16%)
LRR 14 388..411 9/22 (41%)
leucine-rich repeat 391..414 CDD:275380 8/22 (36%)
LRR 15 413..436 7/29 (24%)
leucine-rich repeat 465..497 CDD:275380 6/31 (19%)
LRR 16 471..494 5/22 (23%)
LRR_8 475..533 CDD:290566 9/57 (16%)
leucine-rich repeat 501..522 CDD:275380 3/20 (15%)
LRR 17 520..543 2/22 (9%)
LRR_8 521..587 CDD:290566 12/68 (18%)
leucine-rich repeat 523..546 CDD:275380 3/25 (12%)
LRR 18 545..572 7/26 (27%)
LRR_RI 546..765 CDD:238064 61/197 (31%)
leucine-rich repeat 547..576 CDD:275380 6/28 (21%)
LRR 19 574..598 3/23 (13%)
leucine-rich repeat 577..600 CDD:275380 4/22 (18%)
LRR_8 600..667 CDD:290566 22/66 (33%)
LRR 20 600..621 6/20 (30%)
leucine-rich repeat 601..631 CDD:275380 7/29 (24%)
LRR 21 629..652 8/22 (36%)
leucine-rich repeat 632..656 CDD:275380 9/23 (39%)
LRR 22 654..677 6/22 (27%)
leucine-rich repeat 657..680 CDD:275380 6/22 (27%)
LRR 23 678..701 10/23 (43%)
LRR_8 679..737 CDD:290566 24/58 (41%)
leucine-rich repeat 681..704 CDD:275380 10/23 (43%)
LRR 24 702..725 8/22 (36%)
leucine-rich repeat 705..728 CDD:275380 9/22 (41%)
LRR 25 727..749 7/15 (47%)
leucine-rich repeat 729..748 CDD:275380 6/13 (46%)
LRR 26 752..776
TIR 871..1007 CDD:214587
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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