DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rk and Flii

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_071292.1 Gene:Flii / 14248 MGIID:1342286 Length:1271 Species:Mus musculus


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380
LRR_RI 180..>383 CDD:238064
leucine-rich repeat 183..204 CDD:275380
LRR_8 203..263 CDD:290566
leucine-rich repeat 205..228 CDD:275380
leucine-rich repeat 229..252 CDD:275380
LRR_8 252..311 CDD:290566
leucine-rich repeat 253..276 CDD:275380
leucine-rich repeat 277..300 CDD:275380
LRR_8 299..359 CDD:290566
leucine-rich repeat 301..324 CDD:275380
leucine-rich repeat 325..348 CDD:275380
LRR_RI 327..567 CDD:238064
leucine-rich repeat 349..371 CDD:275380
LRR_8 370..425 CDD:290566
leucine-rich repeat 372..393 CDD:275380
leucine-rich repeat 394..415 CDD:275380
leucine-rich repeat 418..486 CDD:275380
leucine-rich repeat 441..464 CDD:275378
LRR_8 487..545 CDD:290566
leucine-rich repeat 487..510 CDD:275380
leucine-rich repeat 511..534 CDD:275380
LRR_8 533..589 CDD:290566
leucine-rich repeat 535..558 CDD:275380
leucine-rich repeat 559..580 CDD:275380
7tm_4 764..>892 CDD:304433
7tm_1 770..1017 CDD:278431
FliiNP_071292.1 Interaction with LRRFIP1 and LRRFIP2. /evidence=ECO:0000250 1..427
LRR_RI <2..137 CDD:238064
leucine-rich repeat 10..34 CDD:275380
LRR_8 33..91 CDD:290566
leucine-rich repeat 35..57 CDD:275380
leucine-rich repeat 58..80 CDD:275380
LRR_RI 89..352 CDD:238064
leucine-rich repeat 106..128 CDD:275380
leucine-rich repeat 129..152 CDD:275380
LRR_8 131..186 CDD:290566
leucine-rich repeat 153..175 CDD:275380
leucine-rich repeat 176..199 CDD:275380
leucine-rich repeat 200..224 CDD:275380
LRR_8 223..281 CDD:290566
leucine-rich repeat 225..247 CDD:275380
leucine-rich repeat 248..270 CDD:275380
leucine-rich repeat 271..318 CDD:275380
leucine-rich repeat 319..341 CDD:275380
gelsolin_S1_like 492..604 CDD:200446
Interaction with ACTL6A. /evidence=ECO:0000250 495..827
gelsolin_like 619..703 CDD:200436
gelsolin_S3_like 723..837 CDD:200448
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 951..977
gelsolin_like <981..1036 CDD:200436
gelsolin_S5_like 1055..1154 CDD:200444
Gelsolin-like 4 1070..1117
gelsolin_S6_like 1165..1264 CDD:200447
Gelsolin-like 5 1178..1220
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.