DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and SLITRK4

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_001171678.1 Gene:SLITRK4 / 139065 HGNCID:23502 Length:837 Species:Homo sapiens


Alignment Length: Identity:/ - (0%)
Similarity:/ - (0%) Gaps:/ - (0%)


- Green bases have known domain annotations that are detailed below.


Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380
LRR_RI 180..>383 CDD:238064
leucine-rich repeat 183..204 CDD:275380
LRR_8 203..263 CDD:290566
leucine-rich repeat 205..228 CDD:275380
leucine-rich repeat 229..252 CDD:275380
LRR_8 252..311 CDD:290566
leucine-rich repeat 253..276 CDD:275380
leucine-rich repeat 277..300 CDD:275380
LRR_8 299..359 CDD:290566
leucine-rich repeat 301..324 CDD:275380
leucine-rich repeat 325..348 CDD:275380
LRR_RI 327..567 CDD:238064
leucine-rich repeat 349..371 CDD:275380
LRR_8 370..425 CDD:290566
leucine-rich repeat 372..393 CDD:275380
leucine-rich repeat 394..415 CDD:275380
leucine-rich repeat 418..486 CDD:275380
leucine-rich repeat 441..464 CDD:275378
LRR_8 487..545 CDD:290566
leucine-rich repeat 487..510 CDD:275380
leucine-rich repeat 511..534 CDD:275380
LRR_8 533..589 CDD:290566
leucine-rich repeat 535..558 CDD:275380
leucine-rich repeat 559..580 CDD:275380
7tm_4 764..>892 CDD:304433
7tm_1 770..1017 CDD:278431
SLITRK4NP_001171678.1 LRR 1 60..81
leucine-rich repeat 63..84 CDD:275380
LRR_8 83..143 CDD:316378
LRR 2 84..105
leucine-rich repeat 85..108 CDD:275380
LRR 3 108..129
leucine-rich repeat 109..132 CDD:275380
LRR_8 132..190 CDD:316378
LRR 4 132..153
leucine-rich repeat 133..156 CDD:275380
LRR 5 156..177
leucine-rich repeat 157..179 CDD:275380
LRR 6 179..200
leucine-rich repeat 180..204 CDD:275380
leucine-rich repeat 205..295 CDD:275380
LRRCT 213..>253 CDD:214507
leucine-rich repeat 296..371 CDD:275380
leucine-rich repeat 372..402 CDD:275380
LRR 7 378..399
LRR_8 402..461 CDD:316378
LRR 8 402..423
leucine-rich repeat 403..426 CDD:275380
LRR 9 426..447
leucine-rich repeat 427..450 CDD:275380
LRR 10 450..471
leucine-rich repeat 451..472 CDD:275380
LRR 11 474..495
leucine-rich repeat 475..496 CDD:275380
LRR 12 497..518
leucine-rich repeat 498..522 CDD:275380
PCC 502..>563 CDD:188093
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.910

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