DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and AgaP_AGAP011503

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:XP_317796.3 Gene:AgaP_AGAP011503 / 1278244 VectorBaseID:AGAP011503 Length:276 Species:Anopheles gambiae


Alignment Length:207 Identity:57/207 - (27%)
Similarity:84/207 - (40%) Gaps:46/207 - (22%)


- Green bases have known domain annotations that are detailed below.


  Fly   187 GNNNLTKLEANSFFMAPNLEELTLSDNS-------IINMDPNAFYGLAKLKRLSLQNCGLKSLPP 244
            ||..:.::|....|...|......|.||       ...::.|      ||.||||.|.||:.|  
Mosquito    68 GNGTVAEIERILRFDQSNTVLFLFSSNSDNQNLHTTFTVERN------KLVRLSLDNAGLERL-- 124

  Fly   245 QSFQGLAQLTSLQLNGNALVSLDGDCLGHLQKLRTLRLEGNLFYRIPTNALAGLRTLEALNLGSN 309
                   :||        |:..:.||     :|..|.:..|....:|| .:..|..|..|:...|
Mosquito   125 -------ELT--------LLGRENDC-----RLADLSVPRNRLRDLPT-GVERLTALRKLDYSYN 168

  Fly   310 LLTIINDEDF--PRMPN---LIVLLLKRNQIMKISAGALKNLTALKVLELDDNLISSLPEGLSKL 369
            ||     |:|  .|:.|   |..|||..|::.:..|....||.||..|:|.:|.:.:|......:
Mosquito   169 LL-----EEFKLDRLANAAGLKQLLLSHNRLERFVATEQVNLAALHKLDLSNNRLRALDASYWTM 228

  Fly   370 SQLQELSITSNR 381
            .||:...:.:||
Mosquito   229 PQLETFHVDNNR 240

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380
LRR_RI 180..>383 CDD:238064 57/207 (28%)
leucine-rich repeat 183..204 CDD:275380 4/16 (25%)
LRR_8 203..263 CDD:290566 17/66 (26%)
leucine-rich repeat 205..228 CDD:275380 4/29 (14%)
leucine-rich repeat 229..252 CDD:275380 9/22 (41%)
LRR_8 252..311 CDD:290566 14/58 (24%)
leucine-rich repeat 253..276 CDD:275380 5/22 (23%)
leucine-rich repeat 277..300 CDD:275380 6/22 (27%)
LRR_8 299..359 CDD:290566 22/64 (34%)
leucine-rich repeat 301..324 CDD:275380 8/24 (33%)
leucine-rich repeat 325..348 CDD:275380 8/22 (36%)
LRR_RI 327..567 CDD:238064 17/55 (31%)
leucine-rich repeat 349..371 CDD:275380 5/21 (24%)
LRR_8 370..425 CDD:290566 4/12 (33%)
leucine-rich repeat 372..393 CDD:275380 3/10 (30%)
leucine-rich repeat 394..415 CDD:275380
leucine-rich repeat 418..486 CDD:275380
leucine-rich repeat 441..464 CDD:275378
LRR_8 487..545 CDD:290566
leucine-rich repeat 487..510 CDD:275380
leucine-rich repeat 511..534 CDD:275380
LRR_8 533..589 CDD:290566
leucine-rich repeat 535..558 CDD:275380
leucine-rich repeat 559..580 CDD:275380
7tm_4 764..>892 CDD:304433
7tm_1 770..1017 CDD:278431
AgaP_AGAP011503XP_317796.3 LRR <97..>194 CDD:227223 36/130 (28%)
leucine-rich repeat 111..136 CDD:275380 14/46 (30%)
leucine-rich repeat 137..159 CDD:275380 6/22 (27%)
LRR_8 160..218 CDD:290566 22/62 (35%)
leucine-rich repeat 160..183 CDD:275380 9/27 (33%)
leucine-rich repeat 184..207 CDD:275380 8/22 (36%)
leucine-rich repeat 208..230 CDD:275380 5/21 (24%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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