DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and LOC103911657

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:XP_009303036.2 Gene:LOC103911657 / 103911657 -ID:- Length:951 Species:Danio rerio


Alignment Length:582 Identity:124/582 - (21%)
Similarity:212/582 - (36%) Gaps:204/582 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   143 ICERWLQKHCHC----------TGSLEVLRLS-CRGI-----GILAVPVNLPNEVVVLDLGNNNL 191
            :|. ||.:.|..          ..|...|.:: ||.:     .:..:|.||.|..|.:|.|.:.:
Zfish    25 VCS-WLNEKCRVYSDGEEFPVKASSASKLNITVCRSVTDIKEDLQGLPANLLNLFVHMDGGCHGV 88

  Fly   192 TKLEANSFFMAPNLEELTLSDNSIINMDPNAFYGLAKLKRLSLQNCGLKSLPPQSFQGLAQLTSL 256
                                      :.||:|...|.|::|::..| ...:||::|.||..:|||
Zfish    89 --------------------------LAPNSFSSFASLEQLTISGC-FSEIPPEAFNGLTNVTSL 126

  Fly   257 QLNGN-----ALVSLDGDCLGHLQKLRTLRLEGNLFYRIPTNALAGLRTLEALNLGSNLLTIIND 316
            .::.|     :.|:||   ..||..|.:|.:..   |.:..             |.||:.     
Zfish   127 TISYNFSENCSKVALD---FSHLPSLTSLSISD---YSLSL-------------LASNVF----- 167

  Fly   317 EDFPRMPNLIVLLLKRNQIMKISAGALKNLTALKVLELDDNLISSLPEGLSKLSQLQELSITSNR 381
            |..|.:.|||:    .|..::..:..|..|:.:|.|:     ..:|.|.|.|..|....|:.:. 
Zfish   168 ETIPLLQNLIL----ANVCLRDMSEVLCRLSKVKTLK-----HFTLKEFLLKRLQYPNCSVFNT- 222

  Fly   382 LRWINDTELPRSMQMLDMRANPLSTISPGAFRGMSKLRKLILSDVRT--LRSFPELEACHALEIL 444
                :|.....:::.:::....:..:..||.:...||.:.:.|...|  ||.. .|...|.::.|
Zfish   223 ----SDISTEFNIEEVNLHFATVEHVDEGALKVFGKLSRFVFSVSSTDFLRDL-SLIGVHKIKTL 282

  Fly   445 --KLDRAGIQEV---------------------------------------------PAN----- 457
              |:|...:.::                                             |||     
Zfish   283 DFKVDLLNVADLCTAAKLYGINSIQVKYKTTNFWPTHTNISGGCKNIKDVMLDTILYPANLLDVN 347

  Fly   458 --------------------------LCRQTPR----LKSLELKTNSLKRIPNLSSCR-----DL 487
                                      ||...|:    |.:::|:   ||::..:.|.:     :|
Zfish   348 CVFQIFSNLTIISIYKHVLRSDDFQTLCASFPQTVKHLSAMDLR---LKKVDTIVSHQFMCFPNL 409

  Fly   488 RLLDLSSNQIEKIQGKPFNGLKQLNDLLLSYNRIKALPQDAFQGIPKLQLLDLEGNEISYIHKEA 552
            ..|..:|::|..|:...|.||.:|.:|.|..|:|.::.:..|.|:.:|.:|||:.|.|.||..::
Zfish   410 ETLIFTSSKIVVIEDFAFIGLNKLKELNLRKNKISSIHRHTFSGLHELLVLDLQENPIIYIEPKS 474

  Fly   553 FSGFTALEDLNLG---------------NNIFPELP--------ESGLRALLHLKTFNNPKL 591
            |..||.|..|.||               ::||..:|        .||||. :||...:|..|
Zfish   475 FGHFTNLSSLLLGDLNFPPNMSLIKLHLSDIFGGIPSNLSNVFISSGLRP-MHLMIGSNTTL 535

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 6/26 (23%)
LRR_RI 180..>383 CDD:238064 46/207 (22%)
leucine-rich repeat 183..204 CDD:275380 2/20 (10%)
LRR_8 203..263 CDD:290566 16/64 (25%)
leucine-rich repeat 205..228 CDD:275380 3/22 (14%)
leucine-rich repeat 229..252 CDD:275380 8/22 (36%)
LRR_8 252..311 CDD:290566 15/63 (24%)
leucine-rich repeat 253..276 CDD:275380 9/27 (33%)
leucine-rich repeat 277..300 CDD:275380 3/22 (14%)
LRR_8 299..359 CDD:290566 13/59 (22%)
leucine-rich repeat 301..324 CDD:275380 5/22 (23%)
leucine-rich repeat 325..348 CDD:275380 5/22 (23%)
LRR_RI 327..567 CDD:238064 66/343 (19%)
leucine-rich repeat 349..371 CDD:275380 6/21 (29%)
LRR_8 370..425 CDD:290566 7/54 (13%)
leucine-rich repeat 372..393 CDD:275380 2/20 (10%)
leucine-rich repeat 394..415 CDD:275380 2/20 (10%)
leucine-rich repeat 418..486 CDD:275380 21/156 (13%)
leucine-rich repeat 441..464 CDD:275378 8/100 (8%)
LRR_8 487..545 CDD:290566 20/57 (35%)
leucine-rich repeat 487..510 CDD:275380 8/22 (36%)
leucine-rich repeat 511..534 CDD:275380 7/22 (32%)
LRR_8 533..589 CDD:290566 24/78 (31%)
leucine-rich repeat 535..558 CDD:275380 10/22 (45%)
leucine-rich repeat 559..580 CDD:275380 11/43 (26%)
7tm_4 764..>892 CDD:304433
7tm_1 770..1017 CDD:278431
LOC103911657XP_009303036.2 None
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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