DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rk and ghsr

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:XP_002931618.1 Gene:ghsr / 100497774 XenbaseID:XB-GENE-484475 Length:359 Species:Xenopus tropicalis


Alignment Length:396 Identity:83/396 - (20%)
Similarity:160/396 - (40%) Gaps:99/396 - (25%)


- Green bases have known domain annotations that are detailed below.


  Fly   682 NEEQLQTQTGGQIATSYMEEYFEEHDVSGPATGYGFGTGLFSGMSTEDFQPGSVQCLPMPGPFLP 746
            :|..:|.:|        |:.|:..::.|.|                ||    .|...|:|     
 Frog     3 SEIYIQNRT--------MDYYYSSNNYSWP----------------ED----PVFLFPVP----- 34

  Fly   747 CADLFDWWTLRCGVWVVFLLSLLG-NGTVVFVLLCSRSK--MDVPRFLVCNLAAADFFMGIYLGI 808
               :....|:.|     .||.::| :|.|:.:|:.|:.|  .......:.::|.:|..:.:.:.:
 Frog    35 ---VLTGITVTC-----ILLFIIGISGNVMTMLVVSKYKDMRTTTNLYLSSMAFSDLLIFLCMPL 91

  Fly   809 LAIVDAATLGEFRMFAIPWQM-SVLCQLSGFLAVLSSELSVYTLAVITLERNYAITHAIHLNKRL 872
                |...|.::|    ||.. |.||:|..|::...:..::..:..:::||.:||...:.....:
 Frog    92 ----DLYRLWQYR----PWNFGSSLCKLFQFVSECCTYSTILNITALSVERYFAICFPLKAKVVI 148

  Fly   873 SLKQAGYIMSVGWVFALIMA--LMPLVGVSDYRKFAVCLPFETTTGP-----------ASLTYVI 924
            :..:...::||.|..:.:.|  :..||||.          .|..|.|           |..:.::
 Frog   149 TKGRVKLVISVLWAVSFVSAGPIFVLVGVE----------HENGTNPLDTNECKATEYAIKSGLL 203

  Fly   925 SLMFINGCAFLTLMGCYLKMYWAIRGSQAW--------------NTNDSRIAKRMALLVFTDFLC 975
            ::|......|..|....|.:.:.:.|.:.|              :.::.:..|.:|::||...||
 Frog   204 TIMVWTSSIFFFLPVFCLTVLYTLIGRKLWRRKRETIGPHTSIRDKHNKQTVKMLAVVVFAFILC 268

  Fly   976 WSP--IAFFSITAIF---GLQLISLEQAKIFTVFVL-PLNSCCNPFLYAIMTKQFKKDCVTLCKH 1034
            |.|  :|.:..:..|   .|::..:.|......||| .|::..||.||.||:|:::   |..|:.
 Frog   269 WLPFHVARYLFSKSFEAGSLEIALISQYCNLVSFVLFYLSAAINPILYNIMSKKYR---VAACRL 330

  Fly  1035 FEESRV 1040
            |...:|
 Frog   331 FRLKQV 336

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380
LRR_RI 180..>383 CDD:238064
leucine-rich repeat 183..204 CDD:275380
LRR_8 203..263 CDD:290566
leucine-rich repeat 205..228 CDD:275380
leucine-rich repeat 229..252 CDD:275380
LRR_8 252..311 CDD:290566
leucine-rich repeat 253..276 CDD:275380
leucine-rich repeat 277..300 CDD:275380
LRR_8 299..359 CDD:290566
leucine-rich repeat 301..324 CDD:275380
leucine-rich repeat 325..348 CDD:275380
LRR_RI 327..567 CDD:238064
leucine-rich repeat 349..371 CDD:275380
LRR_8 370..425 CDD:290566
leucine-rich repeat 372..393 CDD:275380
leucine-rich repeat 394..415 CDD:275380
leucine-rich repeat 418..486 CDD:275380
leucine-rich repeat 441..464 CDD:275378
LRR_8 487..545 CDD:290566
leucine-rich repeat 487..510 CDD:275380
leucine-rich repeat 511..534 CDD:275380
LRR_8 533..589 CDD:290566
leucine-rich repeat 535..558 CDD:275380
leucine-rich repeat 559..580 CDD:275380
7tm_4 764..>892 CDD:304433 27/131 (21%)
7tm_1 770..1017 CDD:278431 58/283 (20%)
ghsrXP_002931618.1 7tm_4 48..334 CDD:304433 66/306 (22%)
7tm_1 53..316 CDD:278431 57/280 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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