DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and LOC100495962

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:XP_004912402.2 Gene:LOC100495962 / 100495962 -ID:- Length:1055 Species:Xenopus tropicalis


Alignment Length:750 Identity:176/750 - (23%)
Similarity:272/750 - (36%) Gaps:224/750 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly   155 TGSLEVLRLSCRGIGILAVPVNLPNEVVVLDLGNNNLTKLEANSFFMAPNLEELTLS-------- 211
            :|..|:..||.....:..||..||..:..|.|.|||:..:..|.|....|||.|.||        
 Frog   213 SGLTELTELSLSFNNLTHVPSKLPASLKQLYLSNNNIQIINRNDFHNLVNLEVLYLSGNCPRCFN 277

  Fly   212 ---------DNSIINMDPNAFYGLAKLKRLSLQNCGLKSLPPQSFQGLAQLTSLQLNGNALVS-- 265
                     .|:.|.:|..||..|..|..|.|.:..||::||..||...||..|.|..|.||:  
 Frog   278 ANYPCKNLCPNTSITIDHFAFQNLKNLTELHLSSTSLKTIPPTWFQNTTQLKKLYLERNYLVNEI 342

  Fly   266 --------------LD----------------GDCLGHLQKLRTLRLEGNLFYRIPTNALA---G 297
                          ||                .|....|..|:.|.::|.:|..|..|.||   .
 Frog   343 ASADFLLNLPFLEVLDLSFNYDLRSYTNNINISDHFSKLVSLKELHIQGYVFKHIAANNLAPLLN 407

  Fly   298 LRTLEALNLGSNLLTIINDEDFPRMPNLIVLLLKRNQI---------MKISAG------------ 341
            |..|:.||||:|.:..::.:.|.:...|.::.|..|:|         ||:..|            
 Frog   408 LSKLKILNLGTNFIRQVDFKIFQQFTGLELIYLSENRITPFSEKNNKMKLVEGYEDKHSRVSSPG 472

  Fly   342 ----------ALKNLTAL---------KVLELDDNLISSL-PEGLSKLSQLQELSITSNRL-RWI 385
                      ..|..:.:         |.|:|..|.|..: |:.....|.:..|:::||.: :.:
 Frog   473 VSFPTQFNFQMTKTFSEVVKPQCSSRGKTLDLSLNSIFFIDPKEFRSFSDVSCLNLSSNGIGQDL 537

  Fly   386 NDTEL--PRSMQMLDMRANPLSTISPGAFRGMSKLRKLILS--------DVRTLRSFPELEACHA 440
            |.||.  .:::..||:..|.|...|..||:.:..|..|.||        | ..:.|...:|....
 Frog   538 NGTEFIYLKNLTYLDLSFNKLDFDSINAFQELPSLEVLDLSYNSHYFIVD-GVIHSLKFIENLQH 601

  Fly   441 LEILKLDRAGIQEVPANLCRQTPRLKSLELKTNSL------------KRIPNLSSCRDLRLLDLS 493
            |::|.|....|..: .:....:..||.|:...|.|            |...||||   |..||:|
 Frog   602 LKVLNLSWNKISTL-TDFRLTSHSLKELQFSGNRLDVLWKNEDKRYHKLFMNLSS---LTCLDIS 662

  Fly   494 SNQIEKIQGK----PFNGLKQLNDLLLSYNRIKALPQDAFQGIPKLQLLDLEGNEISYIHKEAFS 554
            .|::.||:|:    |.:    |.:|.|:.|.:.....:..|....|:.|||..|:::.|      
 Frog   663 YNRLSKIKGELRYLPLS----LTELYLNSNELVYFGWEELQAYENLKYLDLSHNKLTMI------ 717

  Fly   555 GFTALEDLNLGNNIFPELPESGLRALLHLKTFNNPKLREFPPPDTFPRIQTLILSYAYHCCAFLP 619
                     :||              |.:.|::               :.:||:|  |:..:.||
 Frog   718 ---------MGN--------------LSIHTYS---------------LSSLIIS--YNSISSLP 742

  Fly   620 LVAMSSQKKTSQVQEAVLFPSDAEFDMTLWNNSMMNIWPQMHNLSKQLGASMHD----------- 673
            :..:...:..|::        |..|:.....||.: :.....|..|.||...:.           
 Frog   743 VAFLHKARNLSEL--------DLSFNHLKSINSSV-LLSGSENYLKVLGLKGNPFVCTCEITDFI 798

  Fly   674 PWETAINFNEEQLQTQTGGQIATSYMEE-----YFEEH--DVSGPATGYGFGTGLFSGMSTEDFQ 731
            .|..|.|....:|.|..  ..||...::     ||:.|  |:.|.|....|    ||     .|.
 Frog   799 SWIYANNVTIPRLATDV--NCATPENKKGSGIIYFDVHTCDLDGAAMILYF----FS-----VFL 852

  Fly   732 PGSVQCLPMPGPFLPCADLFDWWTLRCGVWVVFLL 766
            ..|:..||:      ..::|.|     .:|.|:.|
 Frog   853 VMSITVLPI------LINVFSW-----DLWYVYHL 876

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 6/20 (30%)
LRR_RI 180..>383 CDD:238064 73/296 (25%)
leucine-rich repeat 183..204 CDD:275380 7/20 (35%)
LRR_8 203..263 CDD:290566 26/76 (34%)
leucine-rich repeat 205..228 CDD:275380 11/39 (28%)
leucine-rich repeat 229..252 CDD:275380 9/22 (41%)
LRR_8 252..311 CDD:290566 26/93 (28%)
leucine-rich repeat 253..276 CDD:275380 10/54 (19%)
leucine-rich repeat 277..300 CDD:275380 9/25 (36%)
LRR_8 299..359 CDD:290566 19/99 (19%)
leucine-rich repeat 301..324 CDD:275380 7/22 (32%)
leucine-rich repeat 325..348 CDD:275380 8/53 (15%)
LRR_RI 327..567 CDD:238064 69/307 (22%)
leucine-rich repeat 349..371 CDD:275380 6/31 (19%)
LRR_8 370..425 CDD:290566 18/65 (28%)
leucine-rich repeat 372..393 CDD:275380 6/23 (26%)
leucine-rich repeat 394..415 CDD:275380 7/20 (35%)
leucine-rich repeat 418..486 CDD:275380 21/87 (24%)
leucine-rich repeat 441..464 CDD:275378 4/22 (18%)
LRR_8 487..545 CDD:290566 19/61 (31%)
leucine-rich repeat 487..510 CDD:275380 9/26 (35%)
leucine-rich repeat 511..534 CDD:275380 5/22 (23%)
LRR_8 533..589 CDD:290566 10/55 (18%)
leucine-rich repeat 535..558 CDD:275380 6/22 (27%)
leucine-rich repeat 559..580 CDD:275380 2/20 (10%)
7tm_4 764..>892 CDD:304433 0/2 (0%)
7tm_1 770..1017 CDD:278431
LOC100495962XP_004912402.2 LRR_8 81..151 CDD:404697
leucine-rich repeat 81..102 CDD:275380
leucine-rich repeat 103..140 CDD:275380
leucine-rich repeat 141..160 CDD:275380
PLN00113 153..>580 CDD:215061 95/366 (26%)
leucine-rich repeat 162..185 CDD:275380
leucine-rich repeat 186..217 CDD:275380 1/3 (33%)
leucine-rich repeat 218..262 CDD:275380 13/43 (30%)
leucine-rich repeat 263..303 CDD:275380 11/39 (28%)
leucine-rich repeat 304..327 CDD:275380 9/22 (41%)
leucine-rich repeat 328..353 CDD:275380 6/24 (25%)
leucine-rich repeat 354..383 CDD:275380 4/28 (14%)
leucine-rich repeat 384..410 CDD:275380 9/25 (36%)
leucine-rich repeat 411..434 CDD:275380 7/22 (32%)
leucine-rich repeat 500..522 CDD:275380 6/21 (29%)
leucine-rich repeat 526..547 CDD:275380 6/20 (30%)
PPP1R42 545..788 CDD:411060 67/306 (22%)
leucine-rich repeat 548..571 CDD:275380 7/22 (32%)
leucine-rich repeat 572..601 CDD:275380 7/29 (24%)
leucine-rich repeat 602..624 CDD:275380 4/22 (18%)
leucine-rich repeat 625..655 CDD:275380 8/29 (28%)
leucine-rich repeat 656..679 CDD:275380 9/22 (41%)
leucine-rich repeat 680..703 CDD:275380 5/22 (23%)
leucine-rich repeat 704..727 CDD:275380 10/51 (20%)
leucine-rich repeat 728..751 CDD:275380 6/24 (25%)
leucine-rich repeat 752..770 CDD:275380 5/26 (19%)
TPKR_C2 786..>825 CDD:417692 7/40 (18%)
TIR_2 893..1030 CDD:419986
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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