DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rk and XB5889249

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:XP_017950848.2 Gene:XB5889249 / 100495326 XenbaseID:XB-GENE-5889250 Length:796 Species:Xenopus tropicalis


Alignment Length:504 Identity:121/504 - (24%)
Similarity:197/504 - (39%) Gaps:122/504 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   153 HCTGSLEVLRLSCRGIGILAVPVNLPN-EVVVLDLGNNNLTKLEANSFFMAPNLEELTLSDNSII 216
            :|...|.:|.||...||.|...|...| .:..||:.||.|..::.:|.....|::.:.||.|:..
 Frog    66 NCFLQLRLLNLSHNLIGELDCSVFKFNPSLEYLDISNNRLHTIKCHSLQYIKNIKRMDLSYNNFK 130

  Fly   217 NMD-PNAFYGLAKLKRLSLQNCGLKSLPPQSFQGLAQLTSLQLNGNALVSLDGDCL--------- 271
            .|| .:.|..|::||.|.|.:   |.:...||..:|             |:|.|.:         
 Frog   131 TMDFCSEFTALSQLKHLGLSS---KKIQKDSFINIA-------------SMDLDFVFLGIENEIE 179

  Fly   272 ---GHLQKLRTLRLEGNLFYRIP-------TNALAGLRTLE------------------ALNLGS 308
               |.||.|.|.:|..||...:.       ::||....|||                  .:|..|
 Frog   180 YENGSLQFLNTNKLHINLQPNLSLASSYLLSDALDTSMTLEVSGAQCDVHCDYFTKSFFTINKNS 244

  Fly   309 NLLTIINDEDFPRMPNLIVLLLKRNQIMKISAGALKNLTALKVLELDDNLISSLPEGLSKLSQLQ 373
            .::.:|....  .||.        |:::||            :..:.|:.:..|...:.:|  ::
 Frog   245 KVVNLIISNS--TMPG--------NEMLKI------------IPPIWDSSVEHLHIKMFRL--IK 285

  Fly   374 EL----------SITSNRLRWI-NDTELPRSMQMLDMRANPLSTISPGAFRGMSKLRKLILSDVR 427
            |.          ||.|..|.:. ||....:.....::.|..|             :..:..|:..
 Frog   286 EFKYVKMDFTHHSIKSFTLEYFTNDVFFFQGTHPFNIFAEML-------------VENVTFSNAG 337

  Fly   428 TLRSF-PELEACHALEILKLDRAGI-QEVPANLCRQTPRLKSLELKTNSLKRIPNLSS----CRD 486
            .:..| |.:.:  .:..|.|....| .|:..| |.....|:.|.|:.|.|:::..:||    .::
 Frog   338 MIHFFCPPVPS--IVRFLNLPSNRITDEIFLN-CSSLNELELLNLQNNKLEQMSKISSMTLKMKN 399

  Fly   487 LRLLDLSSNQIEKIQGKPFNGLKQLNDLLLSYNRIKALPQDAFQGIP-KLQLLDLEGNEISYIHK 550
            |:.||||.|.:.....|..|.:..|..|.||.:   .|....|..:| .||:|||..|:||.|..
 Frog   400 LKHLDLSKNGLHIDNEKQCNWMDSLVFLNLSES---GLTNSVFGCLPINLQILDLSKNQISSIPI 461

  Fly   551 EAFSGFTALEDLNLGNNIFPELPE-----SGLRALLHLKTFNNPKLREF 594
            |. ..|.:|::|:|.:|...::|:     :.|..|...:.|.|...:||
 Frog   462 EV-KNFVSLKELHLASNRLTDIPDCHNIGNNLGVLKVDENFINLPPKEF 509

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 8/20 (40%)
LRR_RI 180..>383 CDD:238064 53/250 (21%)
leucine-rich repeat 183..204 CDD:275380 6/20 (30%)
LRR_8 203..263 CDD:290566 16/60 (27%)
leucine-rich repeat 205..228 CDD:275380 7/23 (30%)
leucine-rich repeat 229..252 CDD:275380 7/22 (32%)
LRR_8 252..311 CDD:290566 18/95 (19%)
leucine-rich repeat 253..276 CDD:275380 5/34 (15%)
leucine-rich repeat 277..300 CDD:275380 7/29 (24%)
LRR_8 299..359 CDD:290566 12/77 (16%)
leucine-rich repeat 301..324 CDD:275380 6/40 (15%)
leucine-rich repeat 325..348 CDD:275380 3/22 (14%)
LRR_RI 327..567 CDD:238064 60/257 (23%)
leucine-rich repeat 349..371 CDD:275380 3/21 (14%)
LRR_8 370..425 CDD:290566 9/65 (14%)
leucine-rich repeat 372..393 CDD:275380 7/31 (23%)
leucine-rich repeat 394..415 CDD:275380 2/20 (10%)
leucine-rich repeat 418..486 CDD:275380 16/73 (22%)
leucine-rich repeat 441..464 CDD:275378 6/23 (26%)
LRR_8 487..545 CDD:290566 21/58 (36%)
leucine-rich repeat 487..510 CDD:275380 8/22 (36%)
leucine-rich repeat 511..534 CDD:275380 7/23 (30%)
LRR_8 533..589 CDD:290566 20/61 (33%)
leucine-rich repeat 535..558 CDD:275380 11/22 (50%)
leucine-rich repeat 559..580 CDD:275380 6/25 (24%)
7tm_4 764..>892 CDD:304433
7tm_1 770..1017 CDD:278431
XB5889249XP_017950848.2 leucine-rich repeat 48..70 CDD:275378 1/3 (33%)
PLN00113 50..>484 CDD:215061 114/477 (24%)
LRR_8 70..129 CDD:404697 19/58 (33%)
leucine-rich repeat 71..94 CDD:275378 9/22 (41%)
leucine-rich repeat 95..118 CDD:275378 6/22 (27%)
leucine-rich repeat 119..143 CDD:275378 7/23 (30%)
LRR <398..>524 CDD:227223 37/116 (32%)
leucine-rich repeat 400..423 CDD:275380 8/22 (36%)
leucine-rich repeat 424..445 CDD:275378 7/23 (30%)
leucine-rich repeat 446..468 CDD:275378 11/22 (50%)
leucine-rich repeat 469..491 CDD:275378 5/21 (24%)
leucine-rich repeat 492..515 CDD:275378 6/18 (33%)
leucine-rich repeat 516..528 CDD:275378
LRRCT 524..576 CDD:214507
TIR 636..777 CDD:214587
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.