DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and rxfp1

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:XP_031751332.1 Gene:rxfp1 / 100494807 XenbaseID:XB-GENE-985695 Length:760 Species:Xenopus tropicalis


Alignment Length:958 Identity:215/958 - (22%)
Similarity:361/958 - (37%) Gaps:306/958 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   125 STASTATDVI-------AGKRTLHSICERWLQKHCHCTGSLEVLRLSCRGIGILAVPVNLPNEVV 182
            ||:|.:.|:.       .|..|      :.|.:..||.|..|     |            .|:..
 Frog    19 STSSESQDISCPLGYFPCGNIT------KCLPQFMHCNGVDE-----C------------GNQAD 60

  Fly   183 VLDLGNNNLTKLEANSFFMAPNLEELTLS--DNSIINMDPNAFYGLAKLKRLSLQNCGLKSLPPQ 245
            ..:.|:||....:.:..| ..:.|::.|:  |   :.|.|:              .|.|..:|.|
 Frog    61 EDNCGDNNGWSQQLDKLF-EKHYEKIGLNVFD---LEMKPS--------------ECTLGPVPTQ 107

  Fly   246 SF-QGLAQLTSLQLNGNALVSLDGDCLGHLQKLRTLRLEGNLFYRIPTNALAGLRTLEALNLGSN 309
            .. :|                |:.||.|  .||||          :|:.:    ..:..::|.:|
 Frog   108 CLCRG----------------LELDCDG--AKLRT----------VPSVS----PNVTIMSLQNN 140

  Fly   310 LLTIINDEDFPRMPNLIVLLLKRNQIMKISAGALKNLTALKVLELDDNLISSLPEGLSKLSQLQE 374
            :|..:..::|...|:|..|.|:.|.|..:|..|.|.|..|..|.|..|.|::|..|:     .::
 Frog   141 MLRKLGPDEFRIFPDLRKLYLQHNNIRTVSVHAFKGLYNLTKLYLSHNEITTLKPGV-----FED 200

  Fly   375 LSITSNRLRWINDTELPRSMQMLDMRANPLSTISPGAFRGMSKLRKLILSDVRTLRSFPELEACH 439
            |    :||.|            |.:..|.::.|.|..|:|::.|..|::     :.:|       
 Frog   201 L----HRLEW------------LIIENNKITRIYPQTFQGLNSLILLVM-----MNNF------- 237

  Fly   440 ALEILKLDRAGIQEVP-ANLCRQTPRLKSLELKTNSLKRIPNLS--SCRDLRLLDLSSNQIEKIQ 501
                       ::.:| .:||:..|:|..|:.:.|:::.:.|.:  ||..|.:|.:..|:|..|.
 Frog   238 -----------LERLPDKSLCQHMPKLNWLDFEGNNVQSLTNTTFISCATLTVLVMRRNRISTIS 291

  Fly   502 GKPFNGLKQLNDLLLSYNRIKALPQDAFQGIPKLQLLDLEGNEISYIHKEAFSGFTALEDLNLGN 566
            ...|:.|.:|::|.|:.|||:|......:|:.:|..|::..|.|..|..:.|.....|:.|:|..
 Frog   292 ENTFSSLYRLDELDLANNRIEAFSPSLMKGVKELSQLNISHNPIQKIQADQFDYVIKLKSLSLEG 356

  Fly   567 NIFPELPESGLRALLHLKTFNNPKLREFPPPDTFPRIQTLILSYAYHCCAFLPLVAMSSQKKTSQ 631
               .|:|....|..:.||...:...::|                  ..|.|.|.|          
 Frog   357 ---IEIPNIQRRMFMPLKNLTHIYFKKF------------------QYCGFAPHV---------- 390

  Fly   632 VQEAVLFPSDAEFDMTLWNNSMMNIWPQMHNLSKQLGASMHDPWETAINFNEEQLQTQTGGQIAT 696
                                  .|..|....:|                                
 Frog   391 ----------------------RNCKPNTDGIS-------------------------------- 401

  Fly   697 SYMEEYFEEHDVSGPATGYGFGTGLFSGMSTEDFQPGSVQCLPMPGPFLPCADLFDWWTLRCGVW 761
                                         |.|:.....||                    |..||
 Frog   402 -----------------------------SLENLLASIVQ--------------------RVFVW 417

  Fly   762 VVFLLSLLGNGTVVFVLLCS----RSKMDVPRFLVCNLAAADFFMGIYLGILAIVDAATLGEFRM 822
            ||.:::..||   :|| :|:    ||:..:....:.:|..||..||:||.::...|....||:..
 Frog   418 VVSVITCFGN---IFV-ICTRPYIRSENKLHAMSIMSLCCADCLMGVYLFVIGYFDLKYRGEYNE 478

  Fly   823 FAIPWQMSVLCQLSGFLAVLSSELSVYTLAVITLERNYAITHAIHLNKRLSLKQAGYIMSVGWVF 887
            .|..|..|..|:|.|.||:||:|:||..|..:|||:...|.:.....|....:....::.: |:.
 Frog   479 NAQAWMDSTQCRLVGSLAILSTEVSVLLLTYLTLEKYICIVYPFRCLKPGKCRTITTLILI-WII 542

  Fly   888 ALIMALMPLVGVSDYRKF----AVCLPF-----ETTTGPASLTYVISLMFINGCAFLTLMGCYLK 943
            ..::|.:||...:.:..:    .||.|.     |:|.  |.:..||..:.:|..||:.::..|..
 Frog   543 GFVIAFIPLSNQTFFHNYYGTNGVCFPLHSEQPESTA--AQIYSVIIFLGVNLAAFIIIVFSYSS 605

  Fly   944 MYWAIRGSQAWNT-------NDSRIAKRMALLVFTDFLCWSPIAFFSITAIFGLQLISLEQAKI- 1000
            |:::|..:....|       .:..:|||...:||||.|||.|        ||.|:|:||.|.:| 
 Frog   606 MFYSIHRTAIMATEIHNHIKKEMTLAKRFFFIVFTDALCWIP--------IFILKLLSLLQVEIP 662

  Fly  1001 ------FTVFVLPLNSCCNPFLYAIMTKQFKKDCVTLCKHFEESRVVG 1042
                  ..:|:||:||..||.||.|.|:.||:....:..::::.|.:|
 Frog   663 GSISSWVVIFILPINSALNPILYTITTRPFKEMIGQIWSNYKQRRSIG 710

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 2/20 (10%)
LRR_RI 180..>383 CDD:238064 46/205 (22%)
leucine-rich repeat 183..204 CDD:275380 4/20 (20%)
LRR_8 203..263 CDD:290566 10/62 (16%)
leucine-rich repeat 205..228 CDD:275380 5/24 (21%)
leucine-rich repeat 229..252 CDD:275380 5/23 (22%)
LRR_8 252..311 CDD:290566 11/58 (19%)
leucine-rich repeat 253..276 CDD:275380 4/22 (18%)
leucine-rich repeat 277..300 CDD:275380 4/22 (18%)
LRR_8 299..359 CDD:290566 18/59 (31%)
leucine-rich repeat 301..324 CDD:275380 4/22 (18%)
leucine-rich repeat 325..348 CDD:275380 9/22 (41%)
LRR_RI 327..567 CDD:238064 62/242 (26%)
leucine-rich repeat 349..371 CDD:275380 7/21 (33%)
LRR_8 370..425 CDD:290566 12/54 (22%)
leucine-rich repeat 372..393 CDD:275380 4/20 (20%)
leucine-rich repeat 394..415 CDD:275380 5/20 (25%)
leucine-rich repeat 418..486 CDD:275380 13/70 (19%)
leucine-rich repeat 441..464 CDD:275378 3/23 (13%)
LRR_8 487..545 CDD:290566 18/57 (32%)
leucine-rich repeat 487..510 CDD:275380 7/22 (32%)
leucine-rich repeat 511..534 CDD:275380 8/22 (36%)
LRR_8 533..589 CDD:290566 14/55 (25%)
leucine-rich repeat 535..558 CDD:275380 6/22 (27%)
leucine-rich repeat 559..580 CDD:275380 6/20 (30%)
7tm_4 764..>892 CDD:304433 37/131 (28%)
7tm_1 770..1017 CDD:278431 81/273 (30%)
rxfp1XP_031751332.1 LDLa 29..64 CDD:238060 9/57 (16%)
LRRNT 105..134 CDD:214470 12/60 (20%)
PPP1R42 131..375 CDD:411060 73/290 (25%)
leucine-rich repeat 132..155 CDD:275380 4/22 (18%)
leucine-rich repeat 156..179 CDD:275380 9/22 (41%)
leucine-rich repeat 180..203 CDD:275380 8/31 (26%)
leucine-rich repeat 204..227 CDD:275380 8/34 (24%)
leucine-rich repeat 228..252 CDD:275380 6/46 (13%)
leucine-rich repeat 253..276 CDD:275380 6/22 (27%)
leucine-rich repeat 277..300 CDD:275380 7/22 (32%)
leucine-rich repeat 301..324 CDD:275380 8/22 (36%)
leucine-rich repeat 325..348 CDD:275380 6/22 (27%)
leucine-rich repeat 349..370 CDD:275380 6/23 (26%)
7tmA_RXFP1_LGR7 410..696 CDD:320631 94/320 (29%)
TM helix 1 412..436 CDD:320631 11/47 (23%)
TM helix 2 445..466 CDD:320631 7/20 (35%)
TM helix 3 490..512 CDD:320631 10/21 (48%)
TM helix 4 534..550 CDD:320631 2/16 (13%)
TM helix 5 582..605 CDD:320631 6/22 (27%)
TM helix 6 631..653 CDD:320631 14/29 (48%)
TM helix 7 664..689 CDD:320631 10/24 (42%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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