DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and XB982628

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:XP_002933014.2 Gene:XB982628 / 100493271 XenbaseID:XB-GENE-982629 Length:387 Species:Xenopus tropicalis


Alignment Length:429 Identity:103/429 - (24%)
Similarity:171/429 - (39%) Gaps:104/429 - (24%)


- Green bases have known domain annotations that are detailed below.


  Fly   653 MMNIWPQMHNLSKQLGASMH-------DPWETAINFNEEQLQTQTGGQIATSYMEEYFEEHDVSG 710
            ::|.|..:|.:.:.....:|       ...||.|.::.|.       :..|.||... ...:.|.
 Frog    10 VLNKWKNIHCVLRLSFIVLHFLVPLSFKKMETTIGWSYEP-------ENLTIYMVNK-NGSNASA 66

  Fly   711 PATGYGFGTGLFSGMSTEDFQPGSVQCLPMPGP-FLPCADLFDWWTLRCGVWVVFLLSLLGNGTV 774
            |.||                    ||.:....| |:||      :||      |.|:.:.||..:
 Frog    67 PFTG--------------------VQLIQSYKPLFIPC------YTL------VVLIGIFGNYLL 99

  Fly   775 VFVLLCSRSKMDVPRFLVCNLAAADFFMGIYLGILAIVDAATLGEFRM-FAIPWQMSV----LCQ 834
            ::|:..:|...:|..|.:.|||.:|..|           .||...|.: :|...|..|    :|.
 Frog   100 LYVICRTRKMHNVTNFFIGNLAFSDMLM-----------CATCVPFTLAYAFNPQGWVFGKFMCY 153

  Fly   835 LSGFLAVLSSELSVYTLAVITLERNYAITHAIHLNKRLSLKQAGYIMSVGWVFALIMALMPLVGV 899
            ....:..::..:||:||..|.::|.||..|.  |.||:|:....|::...|:.:     ..|||.
 Frog   154 FVFLMQPVTVYVSVFTLTAIAVDRYYATVHP--LKKRISVTTCIYVLMGIWLLS-----CALVGP 211

  Fly   900 S-------DYRK--FAVCLPFETTTGPASLTYVISLMFINGCAFLTLMG-CYLKMYWAIRG---- 950
            :       ::::  |.:|..|........|.|..|.:.|.....|:.:. .|:.:...::.    
 Frog   212 AIAHTYHVEFQQEGFTICEEFWMGKETERLAYAYSTLIITYILPLSAVSLSYICITVKLKNRVVP 276

  Fly   951 -----SQAWNTNDSRIAK----RMALLVFTDF-LCWSPIAFFSITAIFGLQLISLE---QAKIFT 1002
                 |||   ...|:.|    |:.:||.|.| :||.||..|:|.....:.||:..   ..::|.
 Frog   277 GHPTQSQA---EFDRLRKRKIFRLIVLVVTAFGICWLPIHVFNIIRDIDINLINKHYFLHIQLFC 338

  Fly  1003 VFVLPLNSCCNPFLYAIMTKQFKKDCVTLCKHFEESRVV 1041
            .:....:|||||||||.:..:|:.:   |.|.|...|.:
 Frog   339 HWFAMSSSCCNPFLYAWLHDRFRSE---LRKMFTFKRKI 374

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380
LRR_RI 180..>383 CDD:238064
leucine-rich repeat 183..204 CDD:275380
LRR_8 203..263 CDD:290566
leucine-rich repeat 205..228 CDD:275380
leucine-rich repeat 229..252 CDD:275380
LRR_8 252..311 CDD:290566
leucine-rich repeat 253..276 CDD:275380
leucine-rich repeat 277..300 CDD:275380
LRR_8 299..359 CDD:290566
leucine-rich repeat 301..324 CDD:275380
leucine-rich repeat 325..348 CDD:275380
LRR_RI 327..567 CDD:238064
leucine-rich repeat 349..371 CDD:275380
LRR_8 370..425 CDD:290566
leucine-rich repeat 372..393 CDD:275380
leucine-rich repeat 394..415 CDD:275380
leucine-rich repeat 418..486 CDD:275380
leucine-rich repeat 441..464 CDD:275378
LRR_8 487..545 CDD:290566
leucine-rich repeat 487..510 CDD:275380
leucine-rich repeat 511..534 CDD:275380
LRR_8 533..589 CDD:290566
leucine-rich repeat 535..558 CDD:275380
leucine-rich repeat 559..580 CDD:275380
7tm_4 764..>892 CDD:304433 34/132 (26%)
7tm_1 770..1017 CDD:278431 70/278 (25%)
XB982628XP_002933014.2 7tmA_PrRP_R 79..364 CDD:320516 82/320 (26%)
TM helix 1 80..106 CDD:320516 10/37 (27%)
TM helix 2 113..138 CDD:320516 9/35 (26%)
TM helix 3 152..182 CDD:320516 9/29 (31%)
TM helix 4 193..214 CDD:320516 5/25 (20%)
TM helix 5 240..269 CDD:320516 6/28 (21%)
TM helix 6 289..319 CDD:320516 12/29 (41%)
TM helix 7 332..357 CDD:320516 10/24 (42%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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