DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rk and lrrc8e.2

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:XP_002935462.1 Gene:lrrc8e.2 / 100490082 XenbaseID:XB-GENE-22064203 Length:779 Species:Xenopus tropicalis


Alignment Length:481 Identity:114/481 - (23%)
Similarity:190/481 - (39%) Gaps:127/481 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    60 LQQQQQQNPQTVQQLSQITVNRTSKSASVTPTGIRE--NVMLPSADPE-----KEAQILYEKSLQ 117
            |::.:..:..|:::|.:.....|        .|.||  ..||| |.|:     .|.::|   .|:
 Frog   375 LREMELNSEWTMEKLGEFVTKDT--------RGRRELQLSMLP-AIPKAVYNLTEVEVL---KLE 427

  Fly   118 EYHGSQLSTASTATDVIAGKRTLHSICERWLQKHCHCTGSLEVLRLSCRGIGILAVPVNLPNEVV 182
            ....:::|.|.:....:.....:|  |...:....:|.                     |.|::.
 Frog   428 LIASARISGAVSRLSALTELHLIH--CSTKMDTDAYCF---------------------LQNKLK 469

  Fly   183 VLDLGNNNLTKLEANSFFMAPNLEELTL------SDNSIINMDPNAFYGLAKLKRLSLQNCGLKS 241
            ||.:...:|.::.. ..:...:|:||.|      |:|..|.:  |:..||..|:.||| |..::.
 Frog   470 VLHIRFTDLEEIPP-WIYNLKSLQELHLSGNLNSSNNKSIRL--NSLRGLTHLRALSL-NSNVQH 530

  Fly   242 LPPQSFQGLAQLTSLQLNGNALVSLDGDC-LGHLQKLRTLRLEGNLFYRIPTNALAGLRTLEALN 305
            ||........||:.|.:. |...:|||.. |..:::|..:.|:.....:|| ..|:.|.:|:.::
 Frog   531 LPSAILDVAGQLSKLSIQ-NGGTTLDGQTQLKRMKQLLEVELQDCQISKIP-GVLSSLLSLQCID 593

  Fly   306 LGSNLLTIINDEDFPRMPNLIVLLLKRNQIMKISAGALKNLTALKVLELDDNLISSLPEGLSKLS 370
            |.||||.::|:                       .|..:.|..|.:|.|:.|.|..||..:..|.
 Frog   594 LSSNLLNVVNE-----------------------IGTFQRLRGLTILRLNHNAIGCLPPSIQHLH 635

  Fly   371 QLQELSITSNRLRWINDTELPRSMQMLDMRANPLSTISPGAFRGMSKLRKLILSDVRTLRSFP-E 434
            .|:||||:.|||..|                 |.|..|      :.:||.:.:|. ..::..| |
 Frog   636 NLEELSISHNRLETI-----------------PTSLFS------LVRLRNVDISH-NNIKVIPLE 676

  Fly   435 LEACHALEILKLDRAGIQEVPANLCRQTPRLKSLELKTNSLKRIPNLSSCRDLRLLDLSSNQIEK 499
            :.....||...:....|..:|..|||.| ||:||:...|:|..:|.:                  
 Frog   677 VGQLSRLEWFAVTGNQISSLPHELCRCT-RLRSLKAGFNNLSSLPTV------------------ 722

  Fly   500 IQGKPFNGLKQLNDLLLSYNRIKALP 525
                 ||.|..|:.|.|:.|.:.:||
 Frog   723 -----FNKLTLLSTLELAGNHLISLP 743

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 1/20 (5%)
LRR_RI 180..>383 CDD:238064 58/209 (28%)
leucine-rich repeat 183..204 CDD:275380 3/20 (15%)
LRR_8 203..263 CDD:290566 21/65 (32%)
leucine-rich repeat 205..228 CDD:275380 10/28 (36%)
leucine-rich repeat 229..252 CDD:275380 7/22 (32%)
LRR_8 252..311 CDD:290566 18/59 (31%)
leucine-rich repeat 253..276 CDD:275380 7/23 (30%)
leucine-rich repeat 277..300 CDD:275380 6/22 (27%)
LRR_8 299..359 CDD:290566 13/59 (22%)
leucine-rich repeat 301..324 CDD:275380 7/22 (32%)
leucine-rich repeat 325..348 CDD:275380 2/22 (9%)
LRR_RI 327..567 CDD:238064 51/200 (26%)
leucine-rich repeat 349..371 CDD:275380 8/21 (38%)
LRR_8 370..425 CDD:290566 14/54 (26%)
leucine-rich repeat 372..393 CDD:275380 9/20 (45%)
leucine-rich repeat 394..415 CDD:275380 3/20 (15%)
leucine-rich repeat 418..486 CDD:275380 20/68 (29%)
leucine-rich repeat 441..464 CDD:275378 8/22 (36%)
LRR_8 487..545 CDD:290566 9/39 (23%)
leucine-rich repeat 487..510 CDD:275380 3/22 (14%)
leucine-rich repeat 511..534 CDD:275380 6/15 (40%)
LRR_8 533..589 CDD:290566
leucine-rich repeat 535..558 CDD:275380
leucine-rich repeat 559..580 CDD:275380
7tm_4 764..>892 CDD:304433
7tm_1 770..1017 CDD:278431
lrrc8e.2XP_002935462.1 Pannexin_like 1..313 CDD:372171
leucine-rich repeat 444..466 CDD:275380 4/44 (9%)
LRR_8 467..527 CDD:338972 18/63 (29%)
leucine-rich repeat 468..490 CDD:275380 3/22 (14%)
leucine-rich repeat 491..518 CDD:275380 10/28 (36%)
LRR 502..>776 CDD:227223 85/318 (27%)
leucine-rich repeat 519..541 CDD:275380 7/22 (32%)
leucine-rich repeat 542..565 CDD:275380 7/23 (30%)
leucine-rich repeat 566..588 CDD:275380 6/22 (27%)
leucine-rich repeat 589..613 CDD:275380 9/46 (20%)
leucine-rich repeat 614..636 CDD:275380 8/21 (38%)
leucine-rich repeat 637..659 CDD:275380 12/44 (27%)
leucine-rich repeat 660..682 CDD:275380 5/22 (23%)
leucine-rich repeat 706..728 CDD:275380 9/44 (20%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.