DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment rk and tlr13

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:XP_002935047.2 Gene:tlr13 / 100485164 XenbaseID:XB-GENE-5873547 Length:948 Species:Xenopus tropicalis


Alignment Length:880 Identity:193/880 - (21%)
Similarity:333/880 - (37%) Gaps:203/880 - (23%)


- Green bases have known domain annotations that are detailed below.


  Fly   154 CTG----SLEVLR---LSCRGIGILAVP---VNLPNEVVVLDLGNNNLTKLEANSFFMAPNLEEL 208
            |.|    |||.:.   .:|.|..::.:.   .:||.:..||::..|.::|::..:|...|.|:||
 Frog    25 CYGYRKCSLEGIHTEYANCVGQSVVTLADAIQDLPYQTRVLNISENEISKIDGYTFSHLPKLQEL 89

  Fly   209 TLSDNSIINMDPNAFYGLAKLKRLSLQNCGLKSLPPQSFQGLAQLTSLQLNGNALVSLDGDCLGH 273
            .|..|.:..:|..||:.|..|..|.|....::||.......|..|....|:.|.:.::....||.
 Frog    90 VLRKNKVNGVDTWAFHNLNDLLILDLSYNLIQSLDTVDLTDLKHLQIFDLSHNRIHTIQMGTLGP 154

  Fly   274 LQKLRTLRLEGNLF--YRIPTNALAG-------------------------LRTLEALNLGSNLL 311
            |..|:.|.|..|..  :|...||::.                         |.:|::|||.:|.:
 Frog   155 LGALQELDLSFNNVSDFRSVANAVSQLPDFLRLSLSSNFITDLKSEQSVTVLSSLQSLNLRNNSI 219

  Fly   312 TIINDEDFPRMPNLIVLLLKRNQIMKISAGALKNLTALKVLELDDNLISSLPEGLSKLSQLQELS 376
            ::: |..|..||:||.|.:.||.:..::..:..||..|..:..|:|.::        :|||..|.
 Frog   220 SVL-DFTFYSMPSLIELNVTRNNLSAVNKSSFSNLPMLAKVTFDENSLN--------ISQLLGLV 275

  Fly   377 ITS-NRLRWIN-----DTEL----------PRSMQMLDMRANPLSTISPGAFRGMSKLRKLILSD 425
            :.: ....|.:     ..||          |: :|:||::.:.::..:.......:.|..||||.
 Frog   276 LPNLTEFHWSSMRPALQHELVSACQVFQTFPK-LQLLDIKHSKIAVTNLSIIGRCTNLTSLILST 339

  Fly   426 VRTLR-SFPELEACHALEILKLDRAGIQEVPANLCRQTPRLKSLELKTNSLKRIPN--LSSCRDL 487
            ....| ...:|:....||:|.||:..::.:..:..|....|.:|.|:.|.|..:.:  .|....|
 Frog   340 SPLPRLQEKDLQDFKYLEVLYLDKCKLRRIANSSWRGLNNLHTLILERNQLSDLEDKLFSPLTSL 404

  Fly   488 RLLDLSSNQIEKIQGKPFNGLKQLNDLLLSYNRIKALPQDAFQGIPKLQLLDLEGNEISYIHKEA 552
            :.||||.|.:..:..|.|:||::||.|.|...:|.|..::.|:....|::|||:.|.||.|...|
 Frog   405 QYLDLSKNYLTHLNEKAFSGLRRLNYLSLKGCKITAATRNNFRYFSNLRVLDLQDNSISLIKSNA 469

  Fly   553 FSGFTALEDLNLGNNIFPELPESGLRALLHLK---------------TFNNPK------------ 590
            ......||.|.|..|....:.::||:.|:.||               ||...|            
 Frog   470 HIYLRKLETLLLSGNKILTIQKNGLKGLVSLKELSLANNNIYKITDNTFKFVKSLRSLDLSRNQL 534

  Fly   591 --LREFPPPDTF---PRIQTLILSYAYHCCAFLP---LVAMSSQKKTSQVQEAVLFPSDAEFDMT 647
              |.:|..|..|   .:::.|..||......::|   ...:.|.|..........|..:..|:..
 Frog   535 WPLHKFQSPTPFLNLTQLEYLDASYQAEGNIYIPASLFQGLQSLKVLRLQGNPSAFFRNVSFEFL 599

  Fly   648 LWNNSMMNIWPQMHNLSK-QLGASMHDPWETAINFNEE------QLQTQTGGQIATSYM-EEYFE 704
            |             ||:: .:.|:::...:..|:|.:|      ||:..|.......:: |:.|.
 Frog   600 L-------------NLTELDISATVYTMTDPPISFEKELFKKLGQLRNLTLDNNGIQFLPEDVFT 651

  Fly   705 -----EHDVSGPATGYGFGTGLFSGMSTEDFQPGSVQCLPMPGPFLPCADLFDWW--TLRCG--- 759
                 ||    .:..|...|.:     :||....           :|..:.||.:  ||.|.   
 Frog   652 NVPMLEH----ISLRYNRLTNI-----SEDILKN-----------VPNLNYFDMYMNTLSCSCDN 696

  Fly   760 ------------VWVVFLLSLLGNGTVVFVLLCSRSKMDVPRFLVCNLAAADFFMGIYLGILAIV 812
                        |.:.|:.|.     ..|.|..:....:...|..|......||:|.::...:::
 Frog   697 YWFQNWSKCNTEVQIPFIQSY-----KCFGLEANEMLFENQDFSFCTNTGYYFFLGSFIITFSLL 756

  Fly   813 DAATLGEFRMFAIPWQMSVLCQLSGFLAVLSSELSVYTLAVITLERNYAITHAIHLNKRLSLKQA 877
            ....|    :..:.|.:..:                |.:..:........|..:|       |..
 Frog   757 TVNLL----VVKLKWTVRYM----------------YCMLEVWFRWKLETTDKVH-------KYD 794

  Fly   878 GYIMSVG----WVFALIMALMPLVGVSDYRKFAVC 908
            .||....    ||   :..|:.::.....|||.:|
 Frog   795 AYISYCEDDEIWV---VEKLLHMLEEQGQRKFKLC 826

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 5/26 (19%)
LRR_RI 180..>383 CDD:238064 58/230 (25%)
leucine-rich repeat 183..204 CDD:275380 5/20 (25%)
LRR_8 203..263 CDD:290566 19/59 (32%)
leucine-rich repeat 205..228 CDD:275380 9/22 (41%)
leucine-rich repeat 229..252 CDD:275380 6/22 (27%)
LRR_8 252..311 CDD:290566 19/85 (22%)
leucine-rich repeat 253..276 CDD:275380 6/22 (27%)
leucine-rich repeat 277..300 CDD:275380 8/49 (16%)
LRR_8 299..359 CDD:290566 19/59 (32%)
leucine-rich repeat 301..324 CDD:275380 8/22 (36%)
leucine-rich repeat 325..348 CDD:275380 7/22 (32%)
LRR_RI 327..567 CDD:238064 68/258 (26%)
leucine-rich repeat 349..371 CDD:275380 3/21 (14%)
LRR_8 370..425 CDD:290566 15/70 (21%)
leucine-rich repeat 372..393 CDD:275380 6/36 (17%)
leucine-rich repeat 394..415 CDD:275380 3/20 (15%)
leucine-rich repeat 418..486 CDD:275380 19/70 (27%)
leucine-rich repeat 441..464 CDD:275378 6/22 (27%)
LRR_8 487..545 CDD:290566 22/57 (39%)
leucine-rich repeat 487..510 CDD:275380 10/22 (45%)
leucine-rich repeat 511..534 CDD:275380 7/22 (32%)
LRR_8 533..589 CDD:290566 21/70 (30%)
leucine-rich repeat 535..558 CDD:275380 9/22 (41%)
leucine-rich repeat 559..580 CDD:275380 7/20 (35%)
7tm_4 764..>892 CDD:304433 19/131 (15%)
7tm_1 770..1017 CDD:278431 22/143 (15%)
tlr13XP_002935047.2 LRR_RI <29..220 CDD:238064 47/190 (25%)
leucine-rich repeat 62..85 CDD:275380 5/22 (23%)
LRR_8 63..144 CDD:290566 24/80 (30%)
leucine-rich repeat 86..133 CDD:275380 15/46 (33%)
LRR_8 132..192 CDD:290566 13/59 (22%)
leucine-rich repeat 134..157 CDD:275380 6/22 (27%)
leucine-rich repeat 158..208 CDD:275380 8/49 (16%)
LRR_8 186..242 CDD:290566 15/56 (27%)
leucine-rich repeat 209..231 CDD:275380 8/22 (36%)
leucine-rich repeat 232..307 CDD:275380 17/82 (21%)
LRR_RI 253..534 CDD:238064 73/289 (25%)
leucine-rich repeat 308..331 CDD:275380 3/22 (14%)
leucine-rich repeat 332..355 CDD:275380 7/22 (32%)
leucine-rich repeat 356..379 CDD:275380 6/22 (27%)
LRR_8 379..438 CDD:290566 20/58 (34%)
leucine-rich repeat 380..403 CDD:275380 6/22 (27%)
leucine-rich repeat 404..427 CDD:275380 10/22 (45%)
leucine-rich repeat 428..451 CDD:275380 7/22 (32%)
leucine-rich repeat 452..475 CDD:275380 9/22 (41%)
LRR_8 474..534 CDD:290566 13/59 (22%)
leucine-rich repeat 476..499 CDD:275380 8/22 (36%)
LRR_8 499..587 CDD:290566 15/87 (17%)
leucine-rich repeat 500..523 CDD:275380 4/22 (18%)
leucine-rich repeat 524..577 CDD:275380 8/52 (15%)
leucine-rich repeat 578..631 CDD:275380 10/65 (15%)
LRR_8 631..685 CDD:290566 13/73 (18%)
leucine-rich repeat 632..655 CDD:275380 4/22 (18%)
leucine-rich repeat 656..676 CDD:275380 6/28 (21%)
TIR 792..935 CDD:214587 10/38 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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