DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and si:ch211-180f4.1

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:NP_001373634.1 Gene:si:ch211-180f4.1 / 100144405 ZFINID:ZDB-GENE-080327-27 Length:744 Species:Danio rerio


Alignment Length:807 Identity:175/807 - (21%)
Similarity:285/807 - (35%) Gaps:257/807 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly   163 LSCRGIGILAVPVNLPNEVVVLDLGNNNLTKLEANSFFMAPNLEELTLSDNSIINMDPNAFYGLA 227
            :.|..:.:..:|.|:..:..||.|.:||::: ..:......||.||.||.|..            
Zfish    53 VDCNELHLSRIPWNISVDTQVLLLQSNNISR-GTSQLQSLVNLTELDLSQNHF------------ 104

  Fly   228 KLKRLSLQNCGLKSLPPQSFQGLAQLTSLQLNGNALVSLDGDCLGHLQKLRTLRLEGNLFYRIPT 292
                ..:.:.||.:        |.||.:|.|..|.:..|...||..|..|..|.:..|....|..
Zfish   105 ----TQIHDVGLNN--------LTQLVTLYLEENQIKELPDMCLKDLVSLEELYINHNQISSIGP 157

  Fly   293 NALAGLRTLEALNLGSNLLTIINDEDFPRMPNLIVLLLKRNQIMKISAGALKNLTALKVLELDDN 357
            ||.:||..|..|:|.||.|..|:...|..:|||.:|::..|.|:.:.......||.|..|.|...
Zfish   158 NAFSGLGNLLRLHLNSNKLVAIDSHWFESLPNLEILMIGENPILGLQDMNFHPLTKLHSLVLAGM 222

  Fly   358 LISSLPEG-LSKLSQLQELSITSNRLRWINDTELPR-------SMQMLDMRANPLSTISPGAFRG 414
            .:..:||| ...|..|:.||...|:|     |.:|:       |::.||:..||:..|..|.|:.
Zfish   223 GLREIPEGAFQGLEYLESLSFFDNKL-----TAVPKKALRVLPSLKFLDLNKNPIVRIQEGDFQD 282

  Fly   415 MSKLRKLILSDVRTLRSFPELEACHALEILKLDRAGIQEVPANLCRQTPRLKSLELKTNSLKRIP 479
            ...|.:|.|:::.              |::.::|...    :||    |::..|||..|     |
Zfish   283 FPHLEELSLNNME--------------ELVAVERGSF----SNL----PQMAKLELYNN-----P 320

  Fly   480 NLSSCRDLRLLDLSSNQIEKIQGKPFNGLKQLNDLLLSYNRIKALPQDAFQGIPKLQLLDLEGNE 544
            :|.      .:|.::          |..::.|..||:..|.:..||.:.....|.|..:.|..|.
Zfish   321 HLF------FIDRAA----------FLKMRGLRTLLIHNNDLTLLPHEIVSAFPNLDEISLHSNP 369

  Fly   545 ISYIHKEAFSGFTALEDLN-----LGNNIFPELPESGLRALLHLKTFNNPKLREFPPPDTFPRIQ 604
            :            ..:.||     |||       :|.|:.|       .|::             
Zfish   370 L------------RCDCLNNWGPVLGN-------QSSLKVL-------EPQI------------- 395

  Fly   605 TLILSYAYHCCAFLPLVAMSSQKKTSQVQEAVLFPSDAEFDMTLWNNSMMNIWP--QMHNLSKQL 667
            ||        ||       |.|....|..:.|:..|        ||.:.....|  ..|....||
Zfish   396 TL--------CA-------SPQHLVGQALQDVVSAS--------WNGASNTCLPLISQHAFPPQL 437

  Fly   668 GASMH-----DPWETAINFNEEQLQTQTGGQIATSYMEEYFEEHDVSGPATGYGFGTGLFSGMST 727
            ..::.     |.|..|....:....|.||.::.:          :...|::..|.||.....|..
Zfish   438 NVTLGQLLTLDCWAVADPAPQFYWVTPTGDKVTS----------EAVSPSSNEGGGTPKKHRMQD 492

  Fly   728 EDFQPGSVQCLPMPGPFLPCADLFDWWTLRCGVWVVFLLSLLGNGT-VVFVLLCSRSKMDVPRFL 791
            :    |:::        :|..:..|.....|..|     :..|..| .|.|.:..||......| 
Zfish   493 Q----GALE--------IPHIEPEDTGLYTCVAW-----NAEGADTRSVSVYVDKRSWNGAHHF- 539

  Fly   792 VCNLAAADFFMGIYLGIL-----AIVDAATLG------EFRM--FAIP---------WQMSVLCQ 834
                       |.:.|::     .::.|.|:.      |::|  :|||         |       
Zfish   540 -----------GGHHGVVNTTGSLVILAKTVHAQSVVLEWKMHPYAIPSNHEAGQPKW------- 586

  Fly   835 LSGFLAVLSSELSVYTLAVITLERNYAITHAI------------------HLNKRLSLKQAGYIM 881
            ||..:.:.:.::| ||..|....:.|.:||.:                  |....::.|:|.:.:
Zfish   587 LSATVKIDNPQIS-YTAMVPVDVQEYNLTHLLPSTEYQVCLTMAGTEQTQHSCINVTTKEASFAV 650

  Fly   882 S-------------VGWVFAL-IMALM 894
            .             :|.:||: ||||:
Zfish   651 EMVAQPTNVALAAVMGSMFAICIMALL 677

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 3/15 (20%)
LRR_RI 180..>383 CDD:238064 59/203 (29%)
leucine-rich repeat 183..204 CDD:275380 5/20 (25%)
LRR_8 203..263 CDD:290566 15/59 (25%)
leucine-rich repeat 205..228 CDD:275380 6/22 (27%)
leucine-rich repeat 229..252 CDD:275380 3/22 (14%)
LRR_8 252..311 CDD:290566 22/58 (38%)
leucine-rich repeat 253..276 CDD:275380 8/22 (36%)
leucine-rich repeat 277..300 CDD:275380 8/22 (36%)
LRR_8 299..359 CDD:290566 19/59 (32%)
leucine-rich repeat 301..324 CDD:275380 8/22 (36%)
leucine-rich repeat 325..348 CDD:275380 5/22 (23%)
LRR_RI 327..567 CDD:238064 57/252 (23%)
leucine-rich repeat 349..371 CDD:275380 7/22 (32%)
LRR_8 370..425 CDD:290566 18/61 (30%)
leucine-rich repeat 372..393 CDD:275380 7/27 (26%)
leucine-rich repeat 394..415 CDD:275380 7/20 (35%)
leucine-rich repeat 418..486 CDD:275380 14/67 (21%)
leucine-rich repeat 441..464 CDD:275378 4/22 (18%)
LRR_8 487..545 CDD:290566 12/57 (21%)
leucine-rich repeat 487..510 CDD:275380 2/22 (9%)
leucine-rich repeat 511..534 CDD:275380 6/22 (27%)
LRR_8 533..589 CDD:290566 12/60 (20%)
leucine-rich repeat 535..558 CDD:275380 3/22 (14%)
leucine-rich repeat 559..580 CDD:275380 7/25 (28%)
7tm_4 764..>892 CDD:304433 33/182 (18%)
7tm_1 770..1017 CDD:278431 36/180 (20%)
si:ch211-180f4.1NP_001373634.1 leucine-rich repeat 51..70 CDD:275380 3/16 (19%)
PPP1R42 55..266 CDD:411060 66/240 (28%)
leucine-rich repeat 71..93 CDD:275380 5/22 (23%)
leucine-rich repeat 94..117 CDD:275380 9/46 (20%)
leucine-rich repeat 118..141 CDD:275380 8/22 (36%)
leucine-rich repeat 142..165 CDD:275380 8/22 (36%)
leucine-rich repeat 166..189 CDD:275380 8/22 (36%)
leucine-rich repeat 190..213 CDD:275380 5/22 (23%)
leucine-rich repeat 214..237 CDD:275380 7/22 (32%)
leucine-rich repeat 238..261 CDD:275380 7/27 (26%)
LRR_8 260..320 CDD:404697 20/86 (23%)
leucine-rich repeat 262..285 CDD:275380 7/22 (32%)
leucine-rich repeat 286..310 CDD:275380 7/45 (16%)
leucine-rich repeat 311..330 CDD:275380 7/39 (18%)
leucine-rich repeat 336..359 CDD:275378 6/22 (27%)
PCC 341..>412 CDD:188093 23/124 (19%)
leucine-rich repeat 360..372 CDD:275378 3/23 (13%)
IG 434..528 CDD:214652 22/120 (18%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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