DRSC/TRiP Functional Genomics Resources

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Protein Alignment rk and lrrc9

DIOPT Version :9

Sequence 1:NP_476702.1 Gene:rk / 34819 FlyBaseID:FBgn0003255 Length:1360 Species:Drosophila melanogaster
Sequence 2:XP_005156778.1 Gene:lrrc9 / 100135428 ZFINID:ZDB-GENE-080917-56 Length:1482 Species:Danio rerio


Alignment Length:740 Identity:173/740 - (23%)
Similarity:291/740 - (39%) Gaps:194/740 - (26%)


- Green bases have known domain annotations that are detailed below.


  Fly    15 PLLLQLLLQLLLLPPSAMGHDETKENPAPDMQNSQEQEPYV--------HLQHLQQQQQQNPQTV 71
            |.||:|               :|:.||   .|.::.....|        ||..:...:::....|
Zfish   785 PALLRL---------------DTRHNP---WQRNESVRMVVLSRLKTLTHLDDVLVMEEEAAAAV 831

  Fly    72 QQLSQITVNRTS-KSASVTPTGIRENVMLPSADPEKEAQILYEKSLQEYHGSQLSTASTATDVIA 135
            |..::..:|:.| .|.|.|             |.|:...:           |.||:|...|.:.:
Zfish   832 QVATRSRINQASLMSHSRT-------------DSERPRSL-----------SLLSSAHLLTQISS 872

  Fly   136 GKRTLHSICERWLQKHCH-----CTGSLEVLRLSCRGIGILAVPVNLPNEVVV--LDLGNNNLTK 193
            ..         |  ||..     .|..:..|.|..:.:..::   ||...|.:  ....:|.||:
Zfish   873 SP---------W--KHSQELESGWTSKITALNLDGQRLTRIS---NLDRLVNLRWASFDHNELTR 923

  Fly   194 LEANSFFMAPNLEELTLSDNSIINMDPNAFYGLAKLKRLSLQNCGLKSLPPQSFQGLAQLTSLQL 258
            :|....  ...||||:|:.||:..::                  ||.|:|        :||.|.:
Zfish   924 IEGLEH--CHLLEELSLNYNSVSRLE------------------GLCSMP--------RLTRLSI 960

  Fly   259 NGNALVSLDGDCLGHLQKLRTLRLEGNLFYRIPTNALAGL---RTLEALNLGSNLLTIIND-EDF 319
            |.|.|..||||.|..|..|..|.:|.|:.     ::|.||   |:|..|.:|:|.::...| ...
Zfish   961 NNNHLQCLDGDILDQLPNLHFLSVENNII-----SSLHGLQRSRSLFELYVGNNDISTTRDIYHL 1020

  Fly   320 PRMPNLIVLLLKRNQIMKISAGALKN--------LTALKVLE-------------------LDDN 357
            ..:.:|::|.|..|.::    ..|:|        |.:||.|:                   |:.:
Zfish  1021 KALSSLVILDLYGNPLV----NKLENYRIYMVFHLPSLKALDGAAVEMSESETAKDVFGGRLNAD 1081

  Fly   358 LISSLPEGLSKLSQLQELSITSNRLRWINDT--ELPRSMQMLDMRANPLSTISPGAFRGMSKLRK 420
            :::. ..|.:....|.||::.|:.:|.::.|  :|..:::.:::..|.|::.|...|....|:..
Zfish  1082 MVAE-KLGHTNYRDLSELNLHSSSIRMVDLTPADLFGNLRSINLEHNNLTSFSGLIFLPNIKVLS 1145

  Fly   421 LILSDVRTLRSFPELEACHA--LEIL--KLDRAGIQEVPANLCRQ------TPRLKSLE---LKT 472
            |..:.|.::....:::: |.  .:||  |:..:|..:..:...|:      .|.:.|||   |..
Zfish  1146 LNYNHVESILPRQKVQS-HMSNKQILYHKVSSSGYGQQNSRPSREGLTDNLEPLMSSLEVLHLGH 1209

  Fly   473 NSLKRIPNLSSCR--DLRLLDLSSNQIEKIQGKPFNGLKQLNDLLLSYNRIKALPQDAFQGIPKL 535
            |.:..:.||...|  :||.|.|..|.|.::.|  .:||::|.:|:|..||||:|.:::|.|...|
Zfish  1210 NGISNLINLQISRLTNLRALFLQGNDISQVDG--LDGLQKLRELVLDRNRIKSLSENSFCGQAVL 1272

  Fly   536 QLLDLEGNEISYI-HKEAFSGFTALEDLNLGNNIFPELPE----SGLRALLHLKTFNNP-KLREF 594
            ..|.|..|.|..: |.:..:|   |..|.|..|...::.|    ..|.:||.|....|| ..|..
Zfish  1273 LDLHLRENRIRELNHLQPLTG---LRRLFLDMNKIQDISELEKLETLPSLLELSVMGNPVTRRSL 1334

  Fly   595 PPPDTFPRIQTLILSYAYHCCAFLPLVAMSSQKKTSQVQEAVLFPSDAEF-----DMTLWNNSMM 654
            ..|.....:.||         ..|..|.:|.:::|    .|.|..::|:.     :|||.....|
Zfish  1335 HRPPVILHLSTL---------QVLDGVTVSLEERT----RAELLNNEAQSSSSGGEMTLPGLVPM 1386

  Fly   655 NIWPQ------MHNLSKQLGASMHD 673
            ...|.      ||.|........||
Zfish  1387 VTRPTPLRSTGMHTLVPDQQDDTHD 1411

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
rkNP_476702.1 leucine-rich repeat 158..179 CDD:275380 4/20 (20%)
LRR_RI 180..>383 CDD:238064 57/235 (24%)
leucine-rich repeat 183..204 CDD:275380 4/22 (18%)
LRR_8 203..263 CDD:290566 16/59 (27%)
leucine-rich repeat 205..228 CDD:275380 7/22 (32%)
leucine-rich repeat 229..252 CDD:275380 4/22 (18%)
LRR_8 252..311 CDD:290566 24/61 (39%)
leucine-rich repeat 253..276 CDD:275380 12/22 (55%)
leucine-rich repeat 277..300 CDD:275380 7/25 (28%)
LRR_8 299..359 CDD:290566 17/87 (20%)
leucine-rich repeat 301..324 CDD:275380 5/23 (22%)
leucine-rich repeat 325..348 CDD:275380 7/30 (23%)
LRR_RI 327..567 CDD:238064 69/284 (24%)
leucine-rich repeat 349..371 CDD:275380 5/40 (13%)
LRR_8 370..425 CDD:290566 13/56 (23%)
leucine-rich repeat 372..393 CDD:275380 7/22 (32%)
leucine-rich repeat 394..415 CDD:275380 4/20 (20%)
leucine-rich repeat 418..486 CDD:275380 17/82 (21%)
leucine-rich repeat 441..464 CDD:275378 5/30 (17%)
LRR_8 487..545 CDD:290566 23/57 (40%)
leucine-rich repeat 487..510 CDD:275380 9/22 (41%)
leucine-rich repeat 511..534 CDD:275380 10/22 (45%)
LRR_8 533..589 CDD:290566 16/60 (27%)
leucine-rich repeat 535..558 CDD:275380 7/23 (30%)
leucine-rich repeat 559..580 CDD:275380 6/24 (25%)
7tm_4 764..>892 CDD:304433
7tm_1 770..1017 CDD:278431
lrrc9XP_005156778.1 LRR <57..>209 CDD:227223
leucine-rich repeat 59..80 CDD:275380
leucine-rich repeat 81..102 CDD:275380
LRR_4 102..143 CDD:289563
leucine-rich repeat 103..124 CDD:275380
leucine-rich repeat 125..146 CDD:275380
LRR_4 146..188 CDD:289563
leucine-rich repeat 147..169 CDD:275380
leucine-rich repeat 170..194 CDD:275380
leucine-rich repeat 695..715 CDD:275380
LRR_4 714..756 CDD:289563
LRR_8 716..770 CDD:290566
leucine-rich repeat 716..737 CDD:275380
leucine-rich repeat 738..759 CDD:275380
leucine-rich repeat 760..813 CDD:275380 9/45 (20%)
leucine-rich repeat 814..888 CDD:275380 20/108 (19%)
leucine-rich repeat 889..910 CDD:275380 4/23 (17%)
leucine-rich repeat 911..932 CDD:275380 4/22 (18%)
LRR_4 933..970 CDD:289563 18/62 (29%)
leucine-rich repeat 933..954 CDD:275380 11/46 (24%)
LRR_8 953..1011 CDD:290566 25/70 (36%)
LRR_4 953..996 CDD:289563 19/55 (35%)
leucine-rich repeat 955..978 CDD:275380 12/22 (55%)
leucine-rich repeat 1026..1080 CDD:275380 11/57 (19%)
LRR_RI <1095..1286 CDD:238064 53/193 (27%)
leucine-rich repeat 1095..1118 CDD:275380 7/22 (32%)
leucine-rich repeat 1119..1140 CDD:275380 4/20 (20%)
leucine-rich repeat 1141..1166 CDD:275380 4/25 (16%)
LRR_8 1200..1258 CDD:290566 21/59 (36%)
leucine-rich repeat 1202..1225 CDD:275380 7/22 (32%)
leucine-rich repeat 1226..1247 CDD:275380 9/22 (41%)
LRR_8 1247..1304 CDD:290566 21/59 (36%)
leucine-rich repeat 1248..1271 CDD:275380 10/22 (45%)
leucine-rich repeat 1272..1293 CDD:275380 6/20 (30%)
leucine-rich repeat 1294..1318 CDD:275380 6/23 (26%)
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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