DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NimC2 and stab1

DIOPT Version :9

Sequence 1:NP_001285922.1 Gene:NimC2 / 34818 FlyBaseID:FBgn0028939 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_001182543.1 Gene:stab1 / 570626 ZFINID:ZDB-GENE-050208-554 Length:2553 Species:Danio rerio


Alignment Length:964 Identity:198/964 - (20%)
Similarity:273/964 - (28%) Gaps:443/964 - (45%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 CVKQAQVVKMRGTLVTMRKHQNSANCTTNCGPLVGRTRTETYLGFTDVCCDGYIRDENNECV-PL 80
            |..:.:|.|.|.|:         :.|..:|   :..|:..:       ||.||...:..:|. .|
Zfish  1289 CKYRTRVGKKRKTV---------SGCLMDC---LRTTKDHS-------CCPGYFGHDCGKCPGTL 1334

  Fly    81 CNDCGASGKC----LLPNVCLCGKGYVSRKDHG----HCEP-----ECSESC------------- 119
            .|.|..:|:|    .....|||.:|:     ||    .|||     :|...|             
Zfish  1335 DNWCSNNGQCEDGLHGTGKCLCNEGF-----HGTACEMCEPGRYGKDCKSECHCEHGKCLDGLEG 1394

  Fly   120 -----------------------------VNGKCVA-----PDECECLAGHRFVNGSQTACEPI- 149
                                         ||..|::     |..|.|.||::   |:.|:||.| 
Zfish  1395 NGQCICFKGWKGVKCSVVVVDDACGGVCDVNANCISGDSGTPPTCSCTAGYK---GNGTSCEEIN 1456

  Fly   150 -CVED---CA-NGRCLETG----KCLCNNGYQRDEKLKKCVPICQDACY--HGDC--------VA 195
             |.||   |: |..|.:|.    .|.|...|..|..:  ||.:  |||.  :|.|        ..
Zfish  1457 PCAEDNGGCSVNANCTKTAPGERTCTCTTNYIGDGVI--CVEM--DACLVNNGGCDENAICMKTG 1517

  Fly   196 PNE--CRCHP-----GHEQRLGVPWICDPICSSGCA-NGYCQ----GAEVCACKMGYAHKDNTLA 248
            ||.  |.|.|     ||......|...|   :.||: |..|:    |...|.|.:|: ..|....
Zfish  1518 PNRVACACRPGFISQGHRCLAVNPCRKD---NGGCSVNAVCRYLGAGERNCTCYIGF-KGDGLQC 1578

  Fly   249 SGC---EPVCNPPC-------------------------------TN------GTCISPGH---- 269
            :|.   |...||..                               ||      .:.|:..|    
Zfish  1579 AGTVSREISRNPEAMWFRNNLGAFRFRDWVGRGPFTVFVPHADYVTNFSNPQVDSWINSSHSSEL 1643

  Fly   270 -----CACSEGHVFAEGSRHECVP--------SCRSG----------------CENG---YCSS- 301
                 .:|.|.|:....|..|.|.        |.|.|                |.||   |... 
Zfish  1644 LRYHIVSCEELHLSDLKSVKEVVTANGYKLRFSVRDGVVYINDNTKIITSDIECSNGILHYIDKV 1708

  Fly   302 ------PGRCECHEGFEKTS-----------------------PHRCS-------PT-------- 322
                  .|:.|.......|:                       .||..       ||        
Zfish  1709 LIPYDITGKAEISTNLNITAAAEQYGFKMFGKLLQDAGLMHVVQHRAFYPFTMFWPTDDVFNNLT 1773

  Fly   323 -------------------CRPGCGQNSRCAA---PD------------TCACD---VGYVFVNG 350
                               .:....::.|.||   |.            |.:|:   :|.:.:||
Zfish  1774 EDRKTWLYSEDHRDKLQGYLKAHIVRDERIAAIGLPTEKRLQTLFGSEITFSCNKDLIGDILING 1838

  Fly   351 ST----------------------------TECE-----------------PFCPRNC----RNG 366
            :.                            ..|:                 |.||...    |..
Zfish  1839 NNARIVNRNMLFDSGIAHGIDQLLEPPSIGARCDDFRSIEIKGRCGSCLSPPLCPYGSTDMNRTS 1903

  Fly   367 ICSSP----------GVCTCLEGFQALLSFY-CIPVCSKTCIHGSCVAPNECRCFTGYRPNPSLG 420
            ||..|          |:.:...|:::...|. |..||:|......|     |:...|        
Zfish  1904 ICRQPYRPYRMPNYYGMYSYGYGYRSYRDFLGCDRVCTKLTWDTKC-----CKNHFG-------- 1955

  Fly   421 ANVCEPICSQG----C-VHGFCIAPE----ICQCDLGFIKRWATGT-CE----PHCPQKCVNSHC 471
             ..|: :||.|    | .||.|...:    :|:|..||     ||. ||    .|....|...:|
Zfish  1956 -RDCQ-VCSGGLEAPCGEHGDCDDGQGGTGVCKCHTGF-----TGKGCELCLANHFGPNCTACNC 2013

  Fly   472 L----------GSGVCRCYEGYKLRPGST-----SICDPECQPGCRNGTCVEPNSCACFAGYEDT 521
            .          |.|.|.|.||:......|     |||.|.|.   .|..|:..|.|.|...||..
Zfish  2014 TIHGKCDEGLDGDGSCFCQEGWMGESCQTAIEVKSICSPACD---LNAVCLPENQCECLEPYEGN 2075

  Fly   522 KVPYECVPSCRPRCENGRCSSPGH---------CECDPGHVVTNSSEPNSCRP--QCQEQ----C 571
            .:.......|..  .||.|.....         |.|..|:    |.:.:.|.|  :|.|:    |
Zfish  2076 GINCTAPDLCSE--YNGGCHEEADCMQSGINITCSCQTGY----SGDGHVCEPINRCVEEANGGC 2134

  Fly   572 IN-AECV--AP--EKCACLPRY----------------RFLPDSSTECEP--IC 602
            .: |:|:  .|  .:|.||..|                |.|.|:. .|:|  ||
Zfish  2135 SDFAKCIFTGPNERRCQCLDGYVGNGVQCLEKVVPPVDRCLEDNG-GCDPKAIC 2187

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC2NP_001285922.1 None
stab1NP_001182543.1 EGF_3 227..257 CDD:289699
Fasciclin 379..475 CDD:295423
FAS1 455..630 CDD:225214
Fasciclin 504..630 CDD:280607
EGF_3 819..847 CDD:289699
EGF_3 859..889 CDD:289699
EGF_3 901..932 CDD:289699
EGF_3 938..974 CDD:289699
Fasciclin 1002..1103 CDD:280607
Fasciclin 1125..1242 CDD:295423
EGF_3 1458..1494 CDD:289699 11/37 (30%)
EGF_3 1500..1536 CDD:289699 10/35 (29%)
EGF_3 1542..1578 CDD:289699 10/39 (26%)
Fasciclin 1611..1711 CDD:280607 17/99 (17%)
Fasciclin 1734..1864 CDD:280607 13/129 (10%)
EGF_3 2085..2120 CDD:289699 8/40 (20%)
EGF_3 2128..2163 CDD:289699 9/34 (26%)
Link_domain_TSG_6_like 2198..2290 CDD:239592
Fasciclin 2322..2448 CDD:295423
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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