DRSC/TRiP Functional Genomics Resources

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Protein Alignment NimC2 and ltbp3

DIOPT Version :9

Sequence 1:NP_001285922.1 Gene:NimC2 / 34818 FlyBaseID:FBgn0028939 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_001244070.1 Gene:ltbp3 / 562912 ZFINID:ZDB-GENE-060526-130 Length:1258 Species:Danio rerio


Alignment Length:695 Identity:168/695 - (24%)
Similarity:241/695 - (34%) Gaps:229/695 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    75 NECVPLCNDCGASGKCLLPN---VCLCGKGYVSRKDHGHCEP--EC-SESCVNGKC---VAPDEC 130
            :||....|.|| .|.|....   :|.|..||.|......||.  || ::.|..|.|   :...:|
Zfish   479 DECKLNSNICG-HGVCANTQNGFMCHCYPGYRSHALTKRCEDENECDAQPCGRGVCLNVLGSYKC 542

  Fly   131 ECLAGHRF--VNGSQTACEPICVEDCAN-------GRCLE---TGKCLCNNGYQRDEKLKKCVPI 183
            .|..|:|.  ::..:.:|..|  .:|.|       |:|:.   :.||.|..|:::  |::| .|.
Zfish   543 NCHHGYRLSEISSGKRSCSDI--NECLNTEICGVGGQCINQQGSYKCECLPGFRK--KIQK-PPH 602

  Fly   184 CQD--ACYHGDCVAPNE-CR----------CHPGHEQRLGVPWICDPICSSG-CANGYCQ---GA 231
            |:|  .|...| :.||| |.          |.||:....||....|.....| |.||.|:   |:
Zfish   603 CEDINECLEPD-ICPNEQCENTLGSYECLPCQPGYRAERGVCHDIDECKKHGVCLNGRCENLAGS 666

  Fly   232 EVCACKMGYAHKDNTLASGCEPV--C--NPPCTNGTCISPG---HCACSEGH-VFAEGSRHECVP 288
            ..|.|..|:..:.|  ..||..:  |  |..|.||.||:..   .|.|..|: ...|||..|.:.
Zfish   667 YRCLCNEGFLPEAN--RKGCRDINECQDNRLCANGHCINTDGSFRCQCYAGYQPTQEGSHCEDIN 729

  Fly   289 SCR--SGCENGYC-SSPG--RCECHEGFEKTSPHRCSPTCRPGCGQNSRCAAPDTCACDVGYVFV 348
            .|:  :.|:.|.| ::.|  ||||.:|:...:...|.                |...||      
Zfish   730 ECKRAANCQRGRCINTMGSYRCECQKGYTLENGRHCK----------------DINECD------ 772

  Fly   349 NGSTTECEPFCPRNCRNGICSSPG---VCTCLEGFQALLSFYCIPVCSK--------------TC 396
             |..:.|:|       :|:|.:..   ||.|.:||:.....:.   |.|              |.
Zfish   773 -GERSLCQP-------HGVCENRQGGYVCVCNDGFRLSEDKHS---CEKIESDKKECYLNLDDTV 826

  Fly   397 IHGSCVAPN----ECRCFTG--------YRPNPSLGANVCEPICSQG------------------ 431
            ...|.:|.|    ||.|..|        ..|.|...:.....:|..|                  
Zfish   827 FCDSVLATNVTKQECCCSIGVGWGDHCEIYPCPVYRSAEYHSLCPIGRGFYHDQEKIEYGFVAHR 891

  Fly   432 ------------CVHGFCIAPE---ICQCDLGFIKRWATGTC----EPHCPQKCVNSHCL---GS 474
                        |..|.|:..:   .|.|..||........|    |.|....|:|.||:   ||
Zfish   892 DIDECVLFSNEICKEGRCMNTQPGFECYCQQGFYYDSNLLECIDVDECHDESLCINGHCVNTRGS 956

  Fly   475 GVCRCYEGYKLRPGSTSICDPECQPGCRNGTCVEPNSCACFAGYEDTKVPYECVPSCRPRCENGR 539
            ..|              :|||...|...|..||.|.    ..|.::.:.|        ..|:||:
Zfish   957 FYC--------------VCDPPWVPDAYNKKCVFPT----IIGIDECQDP--------ANCKNGQ 995

  Fly   540 C---SSPGHCECDPGHVVTNSSEPNSC-RP-----------------QCQE--QCINAECV-APE 580
            |   ....:|.|.|..  |.:|:.||| .|                 :|::  .|.|..|| .|.
Zfish   996 CVNTQDSYYCLCSPPW--TLASDRNSCVTPEEQAVMGVSVVHLTDVNECEDPSYCRNGRCVNTPG 1058

  Fly   581 KCACLPRYRFLPDSSTEC-EPICSKGCLSGQECVAPDTCAGFESL 624
            ...|:            | :|:.....|  ::||..|..|..:.:
Zfish  1059 SFHCI------------CTQPLTFSAAL--KQCVYDDRTAAHKDI 1089

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC2NP_001285922.1 None
ltbp3NP_001244070.1 EGF_CA 290..>320 CDD:214542
TB 348..382 CDD:279073
EGF_CA 562..594 CDD:214542 9/33 (27%)
EGF_CA 605..640 CDD:214542 10/35 (29%)
EGF_CA 645..>675 CDD:214542 9/29 (31%)
EGF_CA 686..726 CDD:214542 13/39 (33%)
EGF_CA 727..766 CDD:214542 10/38 (26%)
EGF_CA 767..809 CDD:214542 13/58 (22%)
TB 828..865 CDD:279073 9/36 (25%)
EGF_CA 935..>965 CDD:214542 12/43 (28%)
EGF_CA 982..1012 CDD:214542 8/39 (21%)
EGF_CA 1038..>1064 CDD:214542 7/37 (19%)
TB <1109..1135 CDD:279073
EGF_CA 1209..>1243 CDD:214542
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
00.000

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