DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NimC2 and STAB2

DIOPT Version :9

Sequence 1:NP_001285922.1 Gene:NimC2 / 34818 FlyBaseID:FBgn0028939 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_060034.9 Gene:STAB2 / 55576 HGNCID:18629 Length:2551 Species:Homo sapiens


Alignment Length:981 Identity:198/981 - (20%)
Similarity:267/981 - (27%) Gaps:481/981 - (49%)


- Green bases have known domain annotations that are detailed below.


  Fly    46 CGPLVGRTRTETYLGFTDVCCDGYIRDENNECVPLC-----NDCGASGKCL----LPNVCLCGKG 101
            |.|...||      ..|..||.|:.   ..:|.| |     |.|..:|.||    ...||.||:|
Human  1323 CQPKCVRT------VITRECCAGFF---GPQCQP-CPGNAQNVCFGNGICLDGVNGTGVCECGEG 1377

  Fly   102 Y-------VSRKDHG-HCEPECSESCVNGKC----VAPDECECLAGHRFVNGSQTACEPICVEDC 154
            :       .:...:| ||:..|  |||:|:|    :....|:|..|.|.|:     |:....||.
Human  1378 FSGTACETCTEGKYGIHCDQAC--SCVHGRCNQGPLGDGSCDCDVGWRGVH-----CDNATTEDN 1435

  Fly   155 ANGRCLETGKCLCNNGYQRDEKLKKCVPICQDACYHGDCVAPNECRCHPGHEQRLGVPWICDPIC 219
            .||.|..:..||.|:                      |..|  .|:|..|.:   |...||..|.
Human  1436 CNGTCHTSANCLTNS----------------------DGTA--SCKCAAGFQ---GNGTICTAIN 1473

  Fly   220 SSGCANGYCQ----------GAEVCACKMGYAHKDNTLA----------SGCEPVCNPPCTNGTC 264
            :...:||.|.          |..||.||.||. .|..:.          .||:.  |..||.   
Human  1474 ACEISNGGCSAKADCKRTTPGRRVCTCKAGYT-GDGIVCLEINPCLENHGGCDK--NAECTQ--- 1532

  Fly   265 ISPGHCACSEGHVFAEGSRHECVPS-------------CRSGCENGYCSSPGRCECHEG-FEKTS 315
            ..|...||:            |:|:             |.:  :||.||....|. |.| .|:|.
Human  1533 TGPNQAACN------------CLPAYTGDGKVCTLINVCLT--KNGGCSEFAICN-HTGQVERTC 1582

  Fly   316 PHRCSP-------TCRPGCGQ----NSRCA-----------------------APDTCACD---- 342
              .|.|       |||....|    |.:.:                       ||.:.|.|    
Human  1583 --TCKPNYIGDGFTCRGSIYQELPKNPKTSQYFFQLQEHFVKDLVGPGPFTVFAPLSAAFDEEAR 1645

  Fly   343 -------------VGYVFV--------------NGSTTECEP----------------------- 357
                         :.|..|              |.::.:.||                       
Human  1646 VKDWDKYGLMPQVLRYHVVACHQLLLENLKLISNATSLQGEPIVISVSQSTVYINNKAKIISSDI 1710

  Fly   358 -------------FCPRN--------------------CRNG------ICSSPGVCTCL------ 377
                         ..|:|                    ..||      :....|:.:.:      
Human  1711 ISTNGIVHIIDKLLSPKNLLITPKDNSGRILQNLTTLATNNGYIKFSNLIQDSGLLSVITDPIHT 1775

  Fly   378 ---------EGFQAL--------------------LSFYCI----------PVCS--KTCIHGS- 400
                     :...||                    |.|:.|          |..:  || :.|| 
Human  1776 PVTLFWPTDQALHALPAEQQDFLFNQDNKDKLKEYLKFHVIRDAKVLAVDLPTSTAWKT-LQGSE 1839

  Fly   401 ----CVAPNE----------------------------------------CRCFTGYRPNPSLGA 421
                |.|..:                                        |..||.:..:...|:
Human  1840 LSVKCGAGRDIGDLFLNGQTCRIVQRELLFDLGVAYGIDCLLIDPTLGGRCDTFTTFDASGECGS 1904

  Fly   422 NVCEPIC---------SQGCVH------------------------------------------- 434
            .|..|.|         .|.|::                                           
Human  1905 CVNTPSCPRWSKPKGVKQKCLYNLPFKRNLEGCRERCSLVIQIPRCCKGYFGRDCQACPGGPDAP 1969

  Fly   435 ----GFCI----APEICQCDLGFIKRWATGT-CE--------PHC-PQKCV-NSHC----LGSGV 476
                |.|:    |...|:|:.||     .|| ||        |.| |..|. :..|    .|||.
Human  1970 CNNRGVCLDQYSATGECKCNTGF-----NGTACEMCWPGRFGPDCLPCGCSDHGQCDDGITGSGQ 2029

  Fly   477 CRCYEGYKLRPGSTSICDPE------CQPGC-RNGTCVEPNSCACFAGYEDTKVPYECVPSCRPR 534
            |.|..|:     :...||.:      |.|.| .:.||.|.|:|.|...||...:....|..|:. 
Human  2030 CLCETGW-----TGPSCDTQAVLPAVCTPPCSAHATCKENNTCECNLDYEGDGITCTVVDFCKQ- 2088

  Fly   535 CENG------RCSSPG---HCECDPGHVVTNSSEPNSC----------RPQCQEQCINAEC--VA 578
             :||      |||..|   .|.|..|:    ..:.:||          ...|.|   :|.|  ..
Human  2089 -DNGGCAKVARCSQKGTKVSCSCQKGY----KGDGHSCTEIDPCADGLNGGCHE---HATCKMTG 2145

  Fly   579 P--EKCACLPRYRFLPDSSTECEP--------ICSKG-CLSGQECV---APDTCAGFESLISPTT 629
            |  .||.|...|   ......|||        :...| |.:..:||   ..||..|...|.||..
Human  2146 PGKHKCECKSHY---VGDGLNCEPEQLPIDRCLQDNGQCHADAKCVDLHFQDTTVGVFHLRSPLG 2207

  Fly   630 GKHLAF 635
            ...|.|
Human  2208 QYKLTF 2213

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC2NP_001285922.1 None
STAB2NP_060034.9 EGF_3 246..275 CDD:289699
EGF_3 326..361 CDD:289699
Fasciclin 382..505 CDD:280607
Fasciclin 526..654 CDD:280607
EGF_3 837..865 CDD:289699
EGF_3 920..951 CDD:289699
EGF_3 957..993 CDD:289699
Fasciclin 1009..1129 CDD:280607
Fasciclin 1148..1265 CDD:280607
EGF_3 1437..1469 CDD:289699 12/58 (21%)
EGF_3 1475..1511 CDD:289699 11/36 (31%)
EGF_3 1517..1553 CDD:289699 10/52 (19%)
EGF_3 1559..1595 CDD:289699 12/40 (30%)
Fasciclin 1617..1726 CDD:280607 9/108 (8%)
Fasciclin 1752..1882 CDD:280607 14/130 (11%)
EGF_3 2086..2121 CDD:289699 10/40 (25%)
EGF_3 2127..2164 CDD:289699 9/42 (21%)
Link_domain_TSG_6_like 2198..2290 CDD:239592 6/16 (38%)
FAS1 2356..2449 CDD:214719
Interaction with TMSB4X. /evidence=ECO:0000269|PubMed:18519035 2504..2514
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2512..2551
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.