DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NimC2 and Scarf1

DIOPT Version :9

Sequence 1:NP_001285922.1 Gene:NimC2 / 34818 FlyBaseID:FBgn0028939 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_001004157.2 Gene:Scarf1 / 380713 MGIID:2449455 Length:820 Species:Mus musculus


Alignment Length:603 Identity:157/603 - (26%)
Similarity:193/603 - (32%) Gaps:214/603 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly   112 EPECSESCVNGKCVAPDECECLAGHRFVNGSQTACEPICVEDCANGRCLETGKCLCNNGYQRDEK 176
            :|.....|   |..:|.|.:|..|.|                                  |:|: 
Mouse    27 DPAGQHVC---KGSSPSELQCCPGWR----------------------------------QKDQ- 53

  Fly   177 LKKC-VPICQ--DACYHGD-CVAPNECRCHPGHEQRLGVPWICDPICSSGCANGY----CQGAEV 233
              :| :|||:  |||...: ||.|..|||.||.   .|..      |||.|...|    |:  |.
Mouse    54 --ECTIPICEGPDACRKEEVCVKPGLCRCKPGF---FGAQ------CSSRCPGQYWGHDCR--ET 105

  Fly   234 CACKMGYAHKDNTLASGCEPV-----CNPPCTNGTCISPGHCACSEGHVFAEGSRHECVPSCRSG 293
            |.|     |.    ...|||.     |.|......|..|  |.|        |...:|.|     
Mouse   106 CPC-----HP----RGQCEPATGDCQCQPNYWGRLCEFP--CTC--------GPHGQCDP----- 146

  Fly   294 CENGYCSSPGRCECHEGFEKTSPHRCSPTCRPGCGQN--SRC-AAPDTCACDVGYVFVNGSTTEC 355
                   ..|.|.|..|:       .|||||..|..|  ||| .|..||.|..|:     ....|
Mouse   147 -------KTGLCHCDPGW-------WSPTCRRPCQCNPASRCDQATGTCVCPPGW-----WGRRC 192

  Fly   356 EPFCPRNCRNGIC-SSPGVCTCLEGFQALLSFYCIPVCSK--TCIHGSC-VAPNECRC---FTGY 413
            ...|  ||....| ...|.|.||.|:..       |.||:  .|:.|.| |....|.|   |.|.
Mouse   193 SFSC--NCHTSPCMQDSGRCVCLPGWWG-------PECSRKCQCVRGQCSVTSGHCSCPPGFHGI 248

  Fly   414 RPNPSLGANVCEPICSQGCVHGFCIAPEIC-QCDLGFIKRWATGTCEPHCPQKCVNSHCLGSGVC 477
            |         ||..|:.|.....|  .|.| .|:|       ..||.|      |..:|      
Mouse   249 R---------CELPCNPGHYGAQC--KESCGHCEL-------NATCSP------VTGNC------ 283

  Fly   478 RCYEGYKLRPGSTSICDPECQPGCRNGTCVEPNSCACFAGYEDTKVPYECVPSCRPRCENGR-C- 540
                             ..|:||.....|.:|    |.||....:    |...| |||..|. | 
Mouse   284 -----------------ESCKPGWNGTQCKQP----CPAGTFGER----CTGQC-PRCRLGEPCQ 322

  Fly   541 SSPGHCE-CDPGHVVTNSSEP-------NSCRPQCQEQCINAECVA-PEKCACLPRYRFLPDSST 596
            :..|||: ||||.:......|       ..|...| ..|....|.| ..:|.|...|     ..|
Mouse   323 AETGHCQHCDPGWLGHRCENPCPLGTFGKGCSSTC-PACAQGTCDAVTGECVCSAGY-----WGT 381

  Fly   597 ECEPICSKGCLSGQECVAPDTCAGFESLISPTTGK-HLAFHW-SMFVLAILLCLALVMIPLLV-- 657
            .|...|..| ..|..|..|..|.  |.|..|.:|. .|..|. :..::.||:.|.|:::.::.  
Mouse   382 SCNSSCPAG-FHGNNCSMPCQCP--EGLCHPVSGTCQLGRHGKNALIVGILVPLLLLLMGIVCCA 443

  Fly   658 -------LREMQRRRRNG 668
                   |....|..|||
Mouse   444 YCCSGTRLDPKDRPERNG 461

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC2NP_001285922.1 None
Scarf1NP_001004157.2 PHA03247 <541..781 CDD:223021
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 549..685
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 715..820
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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