DRSC/TRiP Functional Genomics Resources

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Protein Alignment NimC2 and Tnr

DIOPT Version :9

Sequence 1:NP_001285922.1 Gene:NimC2 / 34818 FlyBaseID:FBgn0028939 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_037177.2 Gene:Tnr / 25567 RGDID:3886 Length:1358 Species:Rattus norvegicus


Alignment Length:428 Identity:83/428 - (19%)
Similarity:130/428 - (30%) Gaps:186/428 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly    17 CVKQAQVVKMRGTLVTMRKHQNSA---NCTTNCGPLVGRTRTETYLGFTDVCCDGYIRDENNECV 78
            |...|||::...:.:.|.:.:.|.   .|.||                   ||.........:.|
  Rat   127 CASSAQVLQELLSRIEMLEREVSVLRDQCNTN-------------------CCQESAATGQLDYV 172

  Fly    79 PLCN--------DCGASGKCLLPNVCLCGKGYVSRKDHGHCEPECSESCVNGKCVAPDECECLAG 135
            |.|:        .||          |:|.:|:..:        .||                   
  Rat   173 PHCSGHGNFSFESCG----------CICNEGWFGK--------NCS------------------- 200

  Fly   136 HRFVNGSQTACEPICVEDCAN-GRCLETGKCLCNNGYQRDEKLKKCVPICQDACYHGDCVAPNEC 199
                       ||.|...|:: |.|:: |:|:|::.|..|                 ||   :|.
  Rat   201 -----------EPYCPLGCSSRGVCVD-GQCICDSEYSGD-----------------DC---SEL 233

  Fly   200 RCHPGHEQRLGVPWICDPICSSGCANGYCQGAEVCACKMGYAHKDNTLASGCEPVCNP------- 257
            ||...              |||   .|.|...| |.|:..|..:|      |..:..|       
  Rat   234 RCPTD--------------CSS---RGLCVDGE-CVCEEPYTGED------CRELRCPGDCSGKG 274

  Fly   258 PCTNGTCISPGHCACSEGHVFAEGSRHECVPSCRSGCENGYCSSPGRCECHEGFEKTSPHRCSPT 322
            .|.||||:      |.||:...:.|:..|:.:| ||  .|:|.. |.|.|.||::       .|.
  Rat   275 QCANGTCL------CQEGYAGEDCSQRRCLNAC-SG--RGHCQE-GLCICEEGYQ-------GPD 322

  Fly   323 CRPGCGQNSRCAAPDTCACDVGYVFVNGSTTECEPFCPRNCRNGICS------------------ 369
            |       |....|:    |:....::..:.|.|...|......:.|                  
  Rat   323 C-------SAVTPPE----DLRVAGISDRSIELEWDGPMAVTEYVISYQPTALGGLQLQQRVPGD 376

  Fly   370 ---------SPGVCTCLEGFQALLSFYCIPVCSKTCIH 398
                     .||:...:..:..:.:...:|:.:|...|
  Rat   377 WSGVTITELEPGLTYNISVYAVISNILSLPITAKVATH 414

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC2NP_001285922.1 None
TnrNP_037177.2 exchanger_TraA <190..>328 CDD:411343 55/244 (23%)
EGF_Tenascin 203..231 CDD:376143 11/48 (23%)
fn3 328..398 CDD:394996 8/73 (11%)
fn3 416..496 CDD:394996
fn3 507..586 CDD:394996
FN3 595..679 CDD:238020
fn3 687..766 CDD:394996
fn3 776..855 CDD:394996
fn3 865..944 CDD:394996
fn3 954..1026 CDD:394996
FN3 1042..1127 CDD:238020
FReD 1134..1342 CDD:238040
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

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