DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NimC2 and Scarf2

DIOPT Version :9

Sequence 1:NP_001285922.1 Gene:NimC2 / 34818 FlyBaseID:FBgn0028939 Length:701 Species:Drosophila melanogaster
Sequence 2:XP_036015777.1 Gene:Scarf2 / 224024 MGIID:1858430 Length:838 Species:Mus musculus


Alignment Length:690 Identity:164/690 - (23%)
Similarity:209/690 - (30%) Gaps:293/690 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly     2 LLLFLVLLSGLQVQGCVKQAQVVKMRGTLVTMRKHQNSANCTTNCGPLVGRTRTETYLGFTDVCC 66
            |||.|.||.||..      .|.:..||..|          |.|....::             .||
Mouse    22 LLLLLWLLPGLAA------PQDLNPRGRNV----------CRTPGSQVL-------------TCC 57

  Fly    67 DGYIRDENNEC-VPLC---NDCGASGKCLLPNVCLCGKGYVSRKDHGHCE-----PECSESCVNG 122
            .|: |...:|| :.:|   :.|..:..|:.|..|.|..||........|.     |:|.|.|   
Mouse    58 AGW-RQLGDECGIAVCEGNSTCSENEVCVRPGECRCRHGYFGANCDTKCPRQFWGPDCKERC--- 118

  Fly   123 KCVAPDECECLAGHRFVNGSQTACEPICVEDCANGRCLE-TGKCLCNN---GYQRDEKLKKCVPI 183
                                  :|.|       :|:|.: ||:|.|:.   |       .:|...
Mouse   119 ----------------------SCHP-------HGQCEDVTGQCTCHARRWG-------ARCEHA 147

  Fly   184 CQDACYHGDC-VAPNECRCHPGHEQRLGVPWICDPICSSGCANGYCQGAEVCACKMGYAHKDNTL 247
            ||  |.||.| .....|||.||.       |...  |:|.|   ||                 :.
Mouse   148 CQ--CQHGTCHPRSGACRCEPGW-------WGAQ--CASAC---YC-----------------SA 181

  Fly   248 ASGCEPVCNPPCTNGTCISPGHCACSEGHVFAEGSRHECVPSCRSG-CENGYCSSPGRCECHEGF 311
            .|.|:|            ..|.|.|..|. :.....::|  :|.|. ||    ...|||:|.   
Mouse   182 TSRCDP------------QTGACLCHVGW-WGRSCNNQC--ACNSSPCE----QQSGRCQCR--- 224

  Fly   312 EKTSPHRCSPTCRPGCGQNSRCAAPD-TCACDVGYVFVNGSTTECEPFCPRNCRNGICSSPGVCT 375
            |:....||...|:  | .:.||...| |||||.||                  |...|..|    
Mouse   225 ERMFGARCDRYCQ--C-SHGRCHPVDGTCACDPGY------------------RGKYCREP---- 264

  Fly   376 CLEGFQALLSFYCIPVCSKTCIHGSCVAPNEC-----RCFTGYRPNPSLGANVCEP-----ICSQ 430
            |..||..       |.|.:.|  |.|.....|     ||.|            |||     .|.|
Mouse   265 CPAGFYG-------PGCRRRC--GQCKGQQPCTVVEGRCLT------------CEPGWNGTKCDQ 308

  Fly   431 GCVHGFCIAPEICQCDLGFIKRWATGTCEPHCPQKCVNSHCLG--SGVC-RCYEGYKLRPGSTSI 492
            .|..||                :..| |...|| .|.:.|...  :|.| .|..|:        |
Mouse   309 PCATGF----------------YGEG-CGHRCP-PCRDGHACNHVTGKCTHCNAGW--------I 347

  Fly   493 CDPECQPGCRNGTCVEPNSCACFAGYEDTKVPYECVPSCRPRCENGRCS-SPGHCECDPG-HVVT 555
            .| .|:..|.|||..|                 :|...|.. |.:|.|. ..|.|.|.|| |   
Mouse   348 GD-RCETKCSNGTYGE-----------------DCAFVCSD-CGSGHCDFQSGRCLCSPGVH--- 390

  Fly   556 NSSEPNSCRPQCQEQCINAECVAPEKCACLPRYRFLPDSSTECEPICSKGCLSGQECVAPDTCAG 620
                    .|.|     |..|.|.                           |.|.:|.  ..|:.
Mouse   391 --------GPHC-----NVTCPAG---------------------------LHGVDCA--QACSC 413

  Fly   621 FESLISPTTGK-HLAFHWSMFVL---AILLCLALVMIPLL 656
            .|....|.||. ||..:....|:   |:|..|..:::.||
Mouse   414 HEESCDPVTGACHLETNQRKGVMGAGALLTLLLGLLLSLL 453

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC2NP_001285922.1 None
Scarf2XP_036015777.1 exchanger_TraA <74..431 CDD:411343 137/584 (23%)
PHA03307 526..>836 CDD:223039
PHA03247 <683..838 CDD:223021
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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