DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NimC2 and Stab1

DIOPT Version :9

Sequence 1:NP_001285922.1 Gene:NimC2 / 34818 FlyBaseID:FBgn0028939 Length:701 Species:Drosophila melanogaster
Sequence 2:NP_619613.2 Gene:Stab1 / 192187 MGIID:2178742 Length:2571 Species:Mus musculus


Alignment Length:908 Identity:193/908 - (21%)
Similarity:259/908 - (28%) Gaps:387/908 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly    24 VKMRGTLVTMRKHQNSANCTTNCGPLVGRTRTETYLGFTDV----CCDGYIRDENNECV--PLCN 82
            :::||..:::      :.|:..|              :.||    ||.||...:..||.  | ..
Mouse    76 LQLRGAAISL------SGCSQEC--------------WKDVVQKACCPGYWGSQCFECPGGP-AT 119

  Fly    83 DCGASGKCL----LPNVCLCGKGYVSR-----KDHGHCEPECSE--SCVNGKCV----APDECEC 132
            .|...|.||    ....|:|.:.:...     :|.....|:|..  :||:|.|.    ....|.|
Mouse   120 PCSGHGTCLDGIEGNGTCVCQENFSGSVCQECRDPNRFGPDCQSVCNCVHGVCSHGPRGDGSCRC 184

  Fly   133 LAGHRFVNGSQTACEPICVE-DC-ANGRC-LETGKCLCNNGYQRDEKLKKCVPICQDACYHGDC- 193
            .||:...:..|..  |:|.. .| .|.:| .|...|.|..||.:.:.    |.:..|.|....| 
Mouse   185 FAGYTGPHCDQEL--PVCQSLKCPQNSQCSAEAPTCKCLPGYTQQDN----VCLAPDPCQPSACS 243

  Fly   194 ------VAPN---ECRCHPGHEQRLGVPWIC---DPICSS--GCANG--YC----QGAEVCACKM 238
                  |.|.   :|:|...:.   |...:|   ||..::  ||.:.  :|    .|...|.|:.
Mouse   244 PLARCSVTPQGQAQCQCPENYH---GDGKVCLPRDPCLTNFGGCPSNSTFCLYRGPGKATCMCRP 305

  Fly   239 GYAHKDNTLASGCEPVCNP-PC-TNGTC-ISPGH---CACSEGHVFAEGSRHEC----------- 286
            |....:|..:.||...|.| .| .:.|| ::|..   |.|....|   |..|.|           
Mouse   306 GMTSINNNASEGCHVSCKPHSCDRSATCQVTPDRKTSCVCKNDEV---GDGHACYGHLLHEVRRA 367

  Fly   287 ----------------------------------VPS-------------------CRSG----- 293
                                              |||                   ||..     
Mouse   368 NQNGLVFLRLRAAIAMLEQGCQEILTTSGPFTVLVPSMFSVSSVSSNMNATLAQQLCRQHVIAGE 432

  Fly   294 --CENGYCSSPGRCECHEGFEKT-------------------SPHRCS----------------- 320
              .||....|..|.....|.|.|                   |.|:.:                 
Mouse   433 HMLENAGPPSTRRWWTLAGQEVTITFKNMRYAYKYEDQPQQFSIHKANYIAANGVFHTVTALRWQ 497

  Fly   321 -PTCRPG-------------------------CGQNS--------RCAAPDTCACD--------- 342
             |...||                         ||..|        ...||...|.|         
Mouse   498 LPPPLPGDSKKTVGQILASTEVFTRFETILENCGLPSILDGPGPFTVFAPSNEAVDSLRDGRLIY 562

  Fly   343 ------------VGYVFVNGSTTECEPFCPRN-----------------------------CRNG 366
                        |.|...|......|....:.                             .|..
Mouse   563 LFTAGLSKLQELVRYHIYNHGQLTVEKLISKGRVLTMANQVLTVNISEEGRILLGPEGIPVRRVD 627

  Fly   367 ICSSPGVCTCLEGFQALLSFYCIPVCSKTC-------IHGSCV----------APNECR------ 408
            :.::.||...|||.  ||....:|:..|.|       :.||||          .||..:      
Mouse   628 VPAANGVIHMLEGI--LLPPTILPILPKHCDEEQHQTVLGSCVDCQALNTSVCPPNSVKMDIFPK 690

  Fly   409 -CFTGYRPNPSLGANV----CEPICSQ-----GCVHGFCIAPEICQCDLGFIKR-WATGTCEPHC 462
             |...:.||   |.||    |...|:|     ||..|| ..|:..||..||... :..|.|    
Mouse   691 ECVYIHDPN---GLNVLKKGCADYCNQTITKRGCCKGF-FGPDCTQCPGGFSNPCYGKGNC---- 747

  Fly   463 PQKCVNSHCLGSGVCRCYEGYKLRPG-STSIC-DP-----ECQP--GCRNGTC-VEPNS-CACFA 516
                 :....|:|.|.|:..||   | :..|| ||     :||.  ||.:|.| ..|.| ..|..
Mouse   748 -----SDGVRGNGACLCFPDYK---GIACHICSDPKKHGEQCQEDCGCVHGLCDNRPGSGGVCQQ 804

  Fly   517 GYEDTKVPYECVPSCRPRCEN---GRCSSPG---------HCECDPG---HVVTNSSEPN--SCR 564
            |        .|.|..:.|..|   |.|.|.|         ||....|   .|..:..|.|  ||:
Mouse   805 G--------TCAPGFQGRFCNESMGNCGSTGLAQPCHSDAHCVIQEGVARCVCHDGFEGNGFSCK 861

  Fly   565 PQCQEQCINAECVAPEKCACLPRYRFLPDSSTECEP--------ICSKGCL-SGQECVAPDTC 618
            .       :..|..|::..|        ..:.||.|        ||.||.. .|:.|||.|.|
Mouse   862 R-------SNPCSRPDRGGC--------SENAECVPGDLGTHHCICHKGWSGDGRICVAIDEC 909

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC2NP_001285922.1 None
Stab1NP_619613.2 Fasciclin 520..644 CDD:280607 18/125 (14%)
EGF_3 915..946 CDD:289699
EGF_3 952..988 CDD:289699
Fasciclin 1000..1121 CDD:280607
EGF_3 1460..1496 CDD:289699
EGF_3 1502..1539 CDD:289699
EGF_3 1545..1582 CDD:289699
Fasciclin 1607..1711 CDD:280607
Fasciclin 1737..1867 CDD:280607
EGF_Lam <1992..2021 CDD:214543
EGF_3 2095..2130 CDD:289699
EGF_3 2136..2173 CDD:289699
Link_Domain 2208..2300 CDD:295393
FAS1 2367..2463 CDD:214719
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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