DRSC/TRiP Functional Genomics Resources

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Protein Alignment NimC2 and tnca

DIOPT Version :9

Sequence 1:NP_001285922.1 Gene:NimC2 / 34818 FlyBaseID:FBgn0028939 Length:701 Species:Drosophila melanogaster
Sequence 2:XP_021332057.1 Gene:tnca / 100149028 ZFINID:ZDB-GENE-130530-849 Length:2336 Species:Danio rerio


Alignment Length:633 Identity:179/633 - (28%)
Similarity:239/633 - (37%) Gaps:186/633 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly     8 LLSGLQVQGCVKQAQVVKMRGTLVTMRKHQNSANCTTNCGPLVGRTRTETYLGFTDVCCDGYIRD 72
            |||.|::           :.|.:.|:|: |..|..|.....:.|...|:.:       |.|:...
Zfish   123 LLSRLEM-----------LEGEVSTLRE-QCGAESTCCSAQVTGAIGTKPF-------CSGHGNY 168

  Fly    73 ENNECVPLCNDCGASGKCLLPNVCLCGKGYVSRKDHGHCEPECSES--CVNGKCVAPDECECLAG 135
            ....|..:|........|.:|:                |..:||:.  |||||      |||..|
Zfish   169 STETCGCVCAPGWKGLNCTIPD----------------CPGDCSDQGRCVNGK------CECFEG 211

  Fly   136 HRFVNGSQTACEPICVEDCA-NGRCLETGKCLCNNGYQRDEKLKKCVPICQDACYHGDCVAPNEC 199
            ....:.|..|    |:.||. ||||| .|||:|:.|:.            .:.|...||:  |.|
Zfish   212 FTGDDCSTDA----CLIDCGDNGRCL-NGKCVCSEGFS------------GEYCTESDCL--NNC 257

  Fly   200 ----RCHPGHEQRLGVPWI---C-DPICSSGCAN-GYCQGAEVCACKMGYAHKD-NTLASGCEPV 254
                ||..| |.....||.   | :.||.:.|.: |.|:.. .|.|..|:..:| ..||      
Zfish   258 LGRGRCVDG-ECVCDEPWTGFDCSELICPNDCYDRGRCENG-TCYCDRGFTGEDCGALA------ 314

  Fly   255 CNPPCT-NGTCISPGHCACSEGHVFAEGSRHECVPSCRSGCENGYCSSPGRCECHEGFEKTSPHR 318
            |...|: .|.||. |.|.|..|:...:.|...|..:|.   :.|.||: |.|.|..||......|
Zfish   315 CPNDCSGRGFCID-GRCVCDAGYTGEDCSSLTCPNNCN---DRGRCSN-GVCICEVGFHGEDCGR 374

  Fly   319 CSPTCRPGCGQNSRCAAPDTCACDVGYVFVNGSTTEC-EPFCPRNCRN-GICSSPGVCTCLEGFQ 381
            .|  |...|.....| ....|.||||:     ...:| |..||.||.| |.|.: |.|.|.|||.
Zfish   375 IS--CPSNCNNRGHC-VDGRCECDVGF-----QGHDCSELSCPNNCNNRGRCVN-GQCVCDEGFG 430

  Fly   382 ALLSFYC-IPVCSKTCI-HGSCVAPNECRCFTGYRPNPSLGANVCEPICSQGCVH-GFCIAPEIC 443
               |..| :..|...|. .|.|| ..||.||..:     .|.:..|..|...|.: |.|||.: |
Zfish   431 ---SEDCGLKTCPSDCYGRGQCV-DGECVCFANF-----AGEDCSELRCPNSCQNRGRCIAGQ-C 485

  Fly   444 QCDLGFIKRWATGTCEPHCPQKCVNSHCLGSGVCRCYEGYKLRPGSTSICDPECQPGCRNGTCVE 508
            .||.||       |.|....:||.|. |||.|  ||.:|                          
Zfish   486 VCDEGF-------TGEDCSQRKCPND-CLGRG--RCVDG-------------------------- 514

  Fly   509 PNSCACFAGYEDTKVPYEC-VPSCRPRC-ENGRCSSPGHCECDPGHVVTNSSEPNSCRPQCQE-- 569
              .|.|..|::.    .:| ||:|...| ::|||.: |.|.||.|......|: .||...|.:  
Zfish   515 --RCVCQDGFKG----QDCSVPTCPGNCNDHGRCVN-GKCVCDEGFFGDACSD-RSCLNDCSDVG 571

  Fly   570 QCINAECVAPEKCACLPRYRFLPDSSTECEPICSKGCLSGQEC--VAP 615
            ||::..|                        ||.:|.: |::|  |:|
Zfish   572 QCVDGRC------------------------ICDEGYI-GEDCSDVSP 594

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC2NP_001285922.1 None
tncaXP_021332057.1 EGF_2 189..217 CDD:285248 13/49 (27%)
EGF_2 316..341 CDD:285248 8/25 (32%)
EGF_2 377..403 CDD:285248 8/31 (26%)
EGF_2 408..434 CDD:285248 14/29 (48%)
EGF_2 470..496 CDD:285248 13/33 (39%)
EGF_2 496..527 CDD:285248 13/65 (20%)
EGF_2 530..558 CDD:285248 11/28 (39%)
FN3 593..679 CDD:238020 1/2 (50%)
fn3 682..763 CDD:306538
fn3 772..852 CDD:306538
FN3 862..947 CDD:238020
FN3 954..1036 CDD:238020
FN3 1087..1171 CDD:238020
fn3 1210..1289 CDD:306538
fn3 1301..1376 CDD:306538
fn3 1392..1464 CDD:306538
FN3 1486..1570 CDD:238020
fn3 1574..1649 CDD:306538
fn3 1665..1740 CDD:306538
fn3 1756..1829 CDD:306538
fn3 1846..1925 CDD:306538
fn3 1935..2013 CDD:306538
fn3 2023..2096 CDD:306538
FReD 2114..2323 CDD:238040
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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