DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Cyp28a5 and shd

DIOPT Version :9

Sequence 1:NP_609694.1 Gene:Cyp28a5 / 34817 FlyBaseID:FBgn0028940 Length:505 Species:Drosophila melanogaster
Sequence 2:NP_001261843.1 Gene:shd / 39592 FlyBaseID:FBgn0003388 Length:540 Species:Drosophila melanogaster


Alignment Length:541 Identity:111/541 - (20%)
Similarity:207/541 - (38%) Gaps:98/541 - (18%)


- Green bases have known domain annotations that are detailed below.


  Fly     1 MVLITLTLVSLVVGLLYAV------------LVWN---YDYW------------RKRG---VPGP 35
            |.:|.|..::||:|...|:            |:.|   .|::            |:||   :|||
  Fly     1 MAVILLLALALVLGCYCALHRHKLADIYLRPLLKNTLLEDFYHAELIQPEAPKRRRRGIWDIPGP 65

  Fly    36 KPKLLCG-NYPNMFTMKRHAIYDLDDIYRQYKNKYDAVGIFGSRSPQLLVINPALARRVFVSNFK 99
            |.....| .:..:...:|:.:..|.::|.....:|..:         :|.:.|:   .|.:.:..
  Fly    66 KRIPFLGTKWIFLLFFRRYKMTKLHEVYADLNRQYGDI---------VLEVMPS---NVPIVHLY 118

  Fly   100 NFHDNEIAKNIDEKTDFIFANNPFSL--------------------TGEKWKTRRADVTPGLTMG 144
            |..|.|.......|..|   ..|..:                    .|..|:..|:.:|..:|..
  Fly   119 NRDDLEKVLKYPSKYPF---RPPTEIIVMYRQSRPDRYASVGIVNEQGPMWQRLRSSLTSSITSP 180

  Fly   145 RI-KTVYPVTNKVCQKLTEWVEKQLRLGSKDGIDAKHMSLCFTTEMVTDCVLG--LGAESFSDKP 206
            |: :...|..|.||....|.:..:....:....:.:.::.....|.|...:||  :|..:...|.
  Fly   181 RVLQNFLPALNAVCDDFIELLRARRDPDTLVVPNFEELANLMGLEAVCTLMLGRRMGFLAIDTKQ 245

  Fly   207 TPIMSKINDLFNQPWTFVLFFILTSSFPSLSHLIKLRFVPVDVERFFV-------DLMGSAVETR 264
            ...:|::.....|     ||.....|:..|.   ..::.|....|.|.       |::...::..
  Fly   246 PQKISQLAAAVKQ-----LFISQRDSYYGLG---LWKYFPTKTYRDFARAEDLIYDVISEIIDHE 302

  Fly   265 RAQL---AAGKQFERSDFLDYILQLGEKRNLDNRQLLAYSMTFLLDGFETTATVLAHILLNLGRN 326
            ..:|   ||.:..|.:......|.:.|.::||.|...:..:.|:..|.||.|..|..:|.::..:
  Fly   303 LEELKKSAACEDDEAAGLRSIFLNILELKDLDIRDKKSAIIDFIAAGIETLANTLLFVLSSVTGD 367

  Fly   327 KEAQNLLREEIRSHLQDGTIAFEKLSDLPYLDACVQETIRLFPPGFMSNKLCTESIEIPNKEGPN 391
            ..|...:..|...: :|..|..:.|::..|..||:||:.||.|..|...::..|.:|:     ..
  Fly   368 PGAMPRILSEFCEY-RDTNILQDALTNATYTKACIQESYRLRPTAFCLARILEEDMEL-----SG 426

  Fly   392 FVVEKGTTVVVPHYCFMLDEEFFPNPQSFQPERFLEPDAAKTFR----ERGVFMGFGDGPRVCIG 452
            :.:..||.|:..:......:..|...:.|.|||:::| |.:.|.    ...:.:.||.|.|.|.|
  Fly   427 YSLNAGTVVLCQNMIACHKDSNFQGAKQFTPERWIDP-ATENFTVNVDNASIVVPFGVGRRSCPG 490

  Fly   453 MRFATVQIKAAIVELISKFNV 473
            .||..:::...:.:::..|:|
  Fly   491 KRFVEMEVVLLLAKMVLAFDV 511

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Cyp28a5NP_609694.1 p450 33..500 CDD:299894 98/479 (20%)
shdNP_001261843.1 p450 63..528 CDD:299894 98/479 (20%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.