DRSC/TRiP Functional Genomics Resources

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Protein Alignment NimC1 and stab1

DIOPT Version :10

Sequence 1:NP_001260453.1 Gene:NimC1 / 34816 FlyBaseID:FBgn0259896 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_001182543.1 Gene:stab1 / 570626 ZFINID:ZDB-GENE-050208-554 Length:2553 Species:Danio rerio


Alignment Length:584 Identity:133/584 - (22%)
Similarity:204/584 - (34%) Gaps:177/584 - (30%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 CEGYEGSVENCKPVCRQQCPQHGFCSSPNTCSCNAGYGGIDCHPVCPTVCGKNEFCDRP------ 143
            |:.:. |:|     .:.:|   |.|.||..|.    ||..|.:        :...|.:|      
Zfish  1871 CDDFR-SIE-----IKGRC---GSCLSPPLCP----YGSTDMN--------RTSICRQPYRPYRM 1914

  Fly   144 ----GVCSCQNGYKRTSPSDNCLPVCEK-----ECGHHSFCSEPGKCE-CEPGYEKVGNGTVFPD 198
                |:.|...||:.......|..||.|     :|..:.|..:   |: |..|.|.       |.
Zfish  1915 PNYYGMYSYGYGYRSYRDFLGCDRVCTKLTWDTKCCKNHFGRD---CQVCSGGLEA-------PC 1969

  Fly   199 GYKNNSNGNCSPICPKDCGQNSRCVRPGVCECENGYAG--------DDGGTNCRPVCSTCPENGL 255
            |    .:|:|      |.||..    .|||:|..|:.|        :..|.|| ..|: |..:|.
Zfish  1970 G----EHGDC------DDGQGG----TGVCKCHTGFTGKGCELCLANHFGPNC-TACN-CTIHGK 2018

  Fly   256 C----LSPGVCVCKPGYVMRN--------DLCQPHCEKCSDNAHCVAPNQCECFPGYESSGADKK 308
            |    ...|.|.|:.|::..:        .:|.|.|:.   ||.|:..|||||...||.:|.:..
Zfish  2019 CDEGLDGDGSCFCQEGWMGESCQTAIEVKSICSPACDL---NAVCLPENQCECLEPYEGNGINCT 2080

  Fly   309 CVPKCSKGCTNGFCFAPETCVCSIGYQMGPNQVCEPKCSLNCVHGKCTSPETCTCDPGYRFKDNS 373
            ....||:  .||.|.....|:     |.|.|                   .||:|..||   ...
Zfish  2081 APDLCSE--YNGGCHEEADCM-----QSGIN-------------------ITCSCQTGY---SGD 2116

  Fly   374 HHECDPI------CDSGCSN-GHCV--APN--FCICHDGYQLNSTNPVTSMCQPICKGC--QFGD 425
            .|.|:||      .:.|||: ..|:  .||  .|.|.|||..|....:..:..|:.: |  ..|.
Zfish  2117 GHVCEPINRCVEEANGGCSDFAKCIFTGPNERRCQCLDGYVGNGVQCLEKVVPPVDR-CLEDNGG 2180

  Fly   426 CVAPNVCECNVGYENINGLCELQTTTDSYEYSTTTVELQSSTVDPQLQT-----STSEVPHSNCT 485
            |....:|.....:....|:..|::....|:.:.|..:.........|.|     ...::....|.
Zfish  2181 CDPKAICRDLHFHTKTAGVFHLRSPEGKYKMNFTQAKQACEAEGANLATFSQLSDAQQLGMHLCV 2245

  Fly   486 AGCMCWIEYDGMG---TFNTAKCAK------ICVDP------QDKPCLNLDNCQCDLSSGQL--- 532
            ||   |::.:..|   .|.:|||..      :..||      .|..|..::...|:..:|.:   
Zfish  2246 AG---WMDGEKAGYPIRFPSAKCGDNHVGIVVYKDPVNSSWLYDAYCYRMNEVACECGAGYVGSG 2307

  Fly   533 -VCQED------SDMDYS------------GENSRYVCHILPEQGARSEAEVRIPDRTG-SSNK 576
             .|..|      :..::|            ||:.:.:...|.::..  ...:.||...| .:||
Zfish  2308 AFCNGDLASVVATTSNFSVFYTNLLKYAEDGEDGKTLLKALSDKSL--NMTIFIPQNNGFGANK 2369

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC1NP_001260453.1 None
stab1NP_001182543.1 EGF_3 227..257 CDD:463759
FAS1 <377..475 CDD:441906
FAS1 491..630 CDD:441906
EGF_3 819..847 CDD:463759
EGF_3 859..889 CDD:463759
EGF_3 901..932 CDD:463759
EGF_3 938..974 CDD:463759
Fasciclin 1002..1103 CDD:396845
Fasciclin 1125..1242 CDD:470649
EGF_3 1458..1494 CDD:463759
EGF_3 1500..1536 CDD:463759
EGF_3 1542..1578 CDD:463759
Fasciclin 1611..1711 CDD:396845
Fasciclin 1734..1864 CDD:396845
EGF_3 2085..2120 CDD:463759 15/63 (24%)
EGF_3 2128..2163 CDD:463759 12/34 (35%)
Link_domain_TSG_6_like 2198..2290 CDD:239592 18/94 (19%)
Fasciclin 2322..2448 CDD:470649 9/50 (18%)
Blue background indicates that the domain is not in the aligned region.

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