DRSC/TRiP Functional Genomics Resources

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Protein Alignment NimC1 and stab2

DIOPT Version :9

Sequence 1:NP_001260453.1 Gene:NimC1 / 34816 FlyBaseID:FBgn0259896 Length:622 Species:Drosophila melanogaster
Sequence 2:XP_017210540.1 Gene:stab2 / 565194 ZFINID:ZDB-GENE-041210-336 Length:2543 Species:Danio rerio


Alignment Length:529 Identity:124/529 - (23%)
Similarity:171/529 - (32%) Gaps:207/529 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    85 CEGYEGSVENC----KPVCRQQC-------PQHGFCSSPNTC-------SCNAGYGGIDCHPVCP 131
            |.....|:.:|    |||..|:|       .:...|.|  ||       .|.:||.|.|| ..||
Zfish  1892 CRSCGSSIMDCPLGSKPVGEQECVLPDSVISRGSKCQS--TCKVVVWKPKCCSGYYGRDC-LACP 1953

  Fly   132 ----TVCGKNEFCDRP----GVCSCQNGYKRTSPSDNCL-----PVCEK-ECGHHSFCSE----P 178
                :.|..:..||..    |.|:|..|:...: .::||     |.|.. .|..|..|.|    .
Zfish  1954 GGPQSPCSNHGKCDEDHLGNGTCTCDTGFTGVA-CESCLDGHFGPDCNACNCTEHGSCDEGLQGT 2017

  Fly   179 GKCECEPGYEKVGNGTVFPDGYKNNSNGNCSPICPKDCGQNSRCVRPGVCECENGYAGDDGGTNC 243
            |.|.||.|:                    ..|                  :|||..|  ||    
Zfish  2018 GSCFCEEGW--------------------TGP------------------QCENKLA--DG---- 2038

  Fly   244 RPVCS-TCPENGLCLSPGVCVCKPGY-------VMRNDLCQPHCEKCSDNAHCVAPNQ---CECF 297
             |||: .|.|.|:|:....|||||.|       .:.| :|:.....||.:|.|....:   |.|.
Zfish  2039 -PVCNPACHEKGVCMENNTCVCKPFYEGDGITCTVAN-MCKYWNGGCSKDAKCSQKGEKVSCACL 2101

  Fly   298 PGYESSGADKKCVP--KCSKGCTNGFCFAPETCV----------CSIGYQMGPNQVCEPK----- 345
            .|:  ||....|.|  .|..| .||.|....||.          |...| :|....||.|     
Zfish  2102 QGF--SGDGFVCTPIDPCVDG-ENGGCHEHATCTMTGPGKRKCECKDSY-VGDGIDCEAKVLPVN 2162

  Fly   346 -CSLNCVHGKCTSPETCTCDPGYRFKDNSHHECDPICDSGCSNGHCVAPNFCICHDGYQLNSTNP 409
             |.::  :|:|.|...||         :.|||     |......|..:.|     ..|:||.|  
Zfish  2163 RCLVD--NGQCHSDAQCT---------DLHHE-----DKTLGVFHYRSTN-----GTYKLNYT-- 2204

  Fly   410 VTSMCQPICKGCQFGDCVAPNVCECNVGYENINGLCELQTTTDSYEYSTTTVELQSSTVDPQLQT 474
               |.|..||..                                           .||:...:|.
Zfish  2205 ---MAQEACKEA-------------------------------------------GSTIATYMQL 2223

  Fly   475 S-TSEVPHSNCTAGCMCWIEYDGMG---TFNTAKCAKICV------------DPQDKPCLNLDNC 523
            | ..:..:|.||||   |::...:.   :|::.:|....|            :..|..|..:.:.
Zfish  2224 SYAQQAGYSLCTAG---WLDKARVAYPMSFSSPRCGSGHVGIVDYGVRNNLSETWDTFCYRVKDV 2285

  Fly   524 QCDLSSGQL 532
            ||...:|.:
Zfish  2286 QCKCKTGYI 2294

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC1NP_001260453.1 None
stab2XP_017210540.1 EGF_3 239..268 CDD:289699
Fasciclin 374..495 CDD:280607
Fasciclin 518..643 CDD:280607
EGF_3 824..855 CDD:289699
EGF_3 910..941 CDD:289699
Fasciclin 1000..1119 CDD:280607
Fasciclin 1135..1252 CDD:280607
EGF_3 1465..1501 CDD:289699
EGF_3 1550..1586 CDD:289699
Fasciclin 1616..1716 CDD:280607
Fasciclin 1742..1873 CDD:280607
EGF_3 2076..2111 CDD:289699 10/36 (28%)
EGF_3 2117..2154 CDD:289699 10/38 (26%)
Link_Domain 2188..2280 CDD:295393 24/147 (16%)
FAS1 2345..2438 CDD:214719
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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