DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NimC1 and STAB2

DIOPT Version :9

Sequence 1:NP_001260453.1 Gene:NimC1 / 34816 FlyBaseID:FBgn0259896 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_060034.9 Gene:STAB2 / 55576 HGNCID:18629 Length:2551 Species:Homo sapiens


Alignment Length:660 Identity:144/660 - (21%)
Similarity:209/660 - (31%) Gaps:231/660 - (35%)


- Green bases have known domain annotations that are detailed below.


  Fly    82 PSCCEGYEGSVENCKPVCRQQCP--------QHGFC----SSPNTCSCNAGYGGIDCH------- 127
            |.||:||.|  .:|     |.||        ..|.|    |:...|.||.|:.|..|.       
Human  1948 PRCCKGYFG--RDC-----QACPGGPDAPCNNRGVCLDQYSATGECKCNTGFNGTACEMCWPGRF 2005

  Fly   128 -PVC-PTVCGKNEFCD----RPGVCSCQNGYKRTSPSDNC-----LP-VCEKECGHHSFCSEPGK 180
             |.| |..|..:..||    ..|.|.|:.|:  |.||  |     || ||...|..|:.|.|...
Human  2006 GPDCLPCGCSDHGQCDDGITGSGQCLCETGW--TGPS--CDTQAVLPAVCTPPCSAHATCKENNT 2066

  Fly   181 CECEPGYEKVGNGTVFPDGYKNNSNGNCSPICPKDCGQNSRCVRPGV---CECENGYAGDDGGTN 242
            |||...||..|......|..|.: ||.|:.:        :||.:.|.   |.|:.||.||  |.:
Human  2067 CECNLDYEGDGITCTVVDFCKQD-NGGCAKV--------ARCSQKGTKVSCSCQKGYKGD--GHS 2120

  Fly   243 CRPV--CST-----CPENGLC--LSPG--VCVCKPGYVMRNDLCQPH---CEKC-SDNAHCVAPN 292
            |..:  |:.     |.|:..|  ..||  .|.||..||.....|:|.   .::| .||..|.|..
Human  2121 CTEIDPCADGLNGGCHEHATCKMTGPGKHKCECKSHYVGDGLNCEPEQLPIDRCLQDNGQCHADA 2185

  Fly   293 QCECFPGYESS----------GADKKCVPKCSKGCTN-----------GFCFAPETCVCSIGYQM 336
            :|......:::          |..|....|..:.|.|           .:....:..:||.|: :
Human  2186 KCVDLHFQDTTVGVFHLRSPLGQYKLTFDKAREACANEAATMATYNQLSYAQKAKYHLCSAGW-L 2249

  Fly   337 GPNQVCEPK--CSLNCVHGKCTSPETCTCDPGYRFKDNSHHECDPICDSGCSNGHCVAPNFCICH 399
            ...:|..|.  .|.||..|.....:       |..:.|.....|..|                  
Human  2250 ETGRVAYPTAFASQNCGSGVVGIVD-------YGPRPNKSEMWDVFC------------------ 2289

  Fly   400 DGYQLNSTNPVTSMCQPICKGCQFGDCVAPNVCECNVGYENINGLCELQTTTDSYEYSTTTVELQ 464
              |::...|                       |.|.|||           ..|.:..|...:::.
Human  2290 --YRMKDVN-----------------------CTCKVGY-----------VGDGFSCSGNLLQVL 2318

  Fly   465 SSTVDPQLQTSTSEV-PHSNCTAGCMCWIEY---------------DGMG--------------- 498
            .|.  |.|....:|| .:||.:|....::|:               .|:|               
Human  2319 MSF--PSLTNFLTEVLAYSNSSARGRAFLEHLTDLSIRGTLFVPQNSGLGENETLSGRDIEHHLA 2381

  Fly   499 --------------TFNTAKCAKICVDPQDKPCLNLDNCQCDLSSGQLVCQEDSDMDYSGENSRY 549
                          |..|...:|:.:.....|   |...:.....|:.:.|    .|....|.  
Human  2382 NVSMFFYNDLVNGTTLQTRLGSKLLITASQDP---LQPTETRFVDGRAILQ----WDIFASNG-- 2437

  Fly   550 VCHILPEQGARSEAEVRIPDRTGSSNKWMIIVGSCAGMIIGV-----AATIIGIKYY---RRSTS 606
            :.|::........|.|.:..           .|..||:...:     |..:....|:   ||:..
Human  2438 IIHVISRPLKAPPAPVTLTH-----------TGLGAGIFFAIILVTGAVALAAYSYFRINRRTIG 2491

  Fly   607 RRNFEAEEAI 616
            .::||:||.|
Human  2492 FQHFESEEDI 2501

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC1NP_001260453.1 None
STAB2NP_060034.9 EGF_3 246..275 CDD:289699
EGF_3 326..361 CDD:289699
Fasciclin 382..505 CDD:280607
Fasciclin 526..654 CDD:280607
EGF_3 837..865 CDD:289699
EGF_3 920..951 CDD:289699
EGF_3 957..993 CDD:289699
Fasciclin 1009..1129 CDD:280607
Fasciclin 1148..1265 CDD:280607
EGF_3 1437..1469 CDD:289699
EGF_3 1475..1511 CDD:289699
EGF_3 1517..1553 CDD:289699
EGF_3 1559..1595 CDD:289699
Fasciclin 1617..1726 CDD:280607
Fasciclin 1752..1882 CDD:280607
EGF_3 2086..2121 CDD:289699 14/45 (31%)
EGF_3 2127..2164 CDD:289699 11/36 (31%)
Link_domain_TSG_6_like 2198..2290 CDD:239592 18/119 (15%)
FAS1 2356..2449 CDD:214719 12/101 (12%)
Interaction with TMSB4X. /evidence=ECO:0000269|PubMed:18519035 2504..2514
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2512..2551
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
User_Submission 00.000 Not matched by this tool.
21.810

Return to query results.
Submit another query.