DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NimC1 and Pear1

DIOPT Version :9

Sequence 1:NP_001260453.1 Gene:NimC1 / 34816 FlyBaseID:FBgn0259896 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_001128431.1 Gene:Pear1 / 295293 RGDID:1305653 Length:1033 Species:Rattus norvegicus


Alignment Length:838 Identity:208/838 - (24%)
Similarity:278/838 - (33%) Gaps:344/838 - (41%)


- Green bases have known domain annotations that are detailed below.


  Fly    29 NDCSHPESVPYNRKVLKSKLVPFQ---QYSYFHGWV---TKYRHQYVYEDETAYRTVM----RP- 82
            |.|:..||.....|  :|.|.||.   ..|....|.   |..:...||  .|.||.|:    || 
  Rat    25 NVCTFWESFTTTTK--ESHLRPFSLPPAESCDRPWEDPHTCAQPMVVY--RTVYRQVVKMDSRPR 85

  Fly    83 -SCCEGYEGSVENCKPVCRQQCPQHGFCSSPNTCSCNAGYGGIDCHPVCP-----------TVCG 135
             .||.||..|...|.|:|.|:| .||.|.:||.|.|..|:.|.||...|.           .:||
  Rat    86 LQCCGGYYESSGACVPLCAQEC-VHGRCVAPNRCQCAPGWRGDDCSSECAPGMWGPQCDRLCLCG 149

  Fly   136 KNEFCD-RPGVCSCQNGYKRTSPSDNCL---------PVCEKECGHHSF---------------- 174
            .:..|| |.|||.|.:|.:   |.| ||         |.|:.:|  |.:                
  Rat   150 NSSSCDPRSGVCFCPSGLQ---PPD-CLQPCPDGHYGPACQFDC--HCYGASCDPRDGACFCPPG 208

  Fly   175 -----CSEP--------------------------GKCECEPGYEKVGNGTVFPDGYKNNS---- 204
                 |:.|                          |.|.|.||:..|......|:|:...:    
  Rat   209 RTGPSCNVPCSQGTDGFFCPRTYPCQNGGVPQGSQGSCSCPPGWMGVICSLPCPEGFHGPNCTQE 273

  Fly   205 ----NG----------NCSP---------ICPK-----------DCGQNSRCV-RPGVCECENGY 234
                ||          :|:|         .||.           ||...:||. ..|.|.||:|:
  Rat   274 CRCHNGGLCDRFTGQCHCAPGYIGDRCREECPVGRFGQDCAETCDCAPGARCFPANGACLCEHGF 338

  Fly   235 AGD--------DG--GTNCRPVCSTCPENGLCLSP--GVCVCKPGYV-----------MRNDLCQ 276
            .||        ||  |.:|:..|:..||:.|...|  |.|.|:||:.           .....||
  Rat   339 TGDRCTERLCPDGRYGLSCQDPCTCDPEHSLSCHPMHGECSCQPGWAGLHCNESCPQDTHGAGCQ 403

  Fly   277 PHCEKCSDNAHCVAPN-QCECFPGYESSGADKKCVP-----KCSK--GCTNGFCFAP--ETCVCS 331
            .|| .|.....|:|.: .|.|.|||........|.|     .||.  .|.|....:|  .||:|.
  Rat   404 EHC-LCLHGGVCLADSGLCRCAPGYTGPHCANLCPPNTYGINCSSHCSCENAIACSPVDGTCICK 467

  Fly   332 IGYQMGPNQV-CEP-------KCSLNCVHGKCTSPET--CTCDPGYR------------------ 368
            .|:|.|...| |.|       ..|..|.|....||:|  |||.||:|                  
  Rat   468 EGWQRGNCSVPCPPGTWGFSCNASCQCAHEGVCSPQTGACTCTPGWRGVHCQLPCPKGQFGEGCA 532

  Fly   369 -FKDNSHHE-CDPI-----CDSG------------------CSN-------GHCVAPN-FCICHD 400
             ..|..|.: |||:     |.:|                  |||       |.||..| .|:|..
  Rat   533 SVCDCDHSDGCDPVHGHCRCQAGWMGTRCHLPCPEGFWGANCSNACTCKNGGTCVPENGNCVCAP 597

  Fly   401 GYQLNSTNPVTSMCQPICKGCQFGDCVAPNVCECNVGYENINGLCELQTTTDSYEYSTTTVELQS 465
            |::..|       ||..|...::|....|  |:||                              
  Rat   598 GFRGPS-------CQRPCPPGRYGKRCVP--CKCN------------------------------ 623

  Fly   466 STVDPQLQTSTSEVPHSNC---TAGCMCWIEYDGMGTFNTA-------KCAKIC-------VDPQ 513
                          .||:|   ...|.|...:.|.....:.       ||::.|       ..||
  Rat   624 --------------NHSSCHPSDGTCSCLAGWTGPDCSESCPPGHWGLKCSQPCQCHHGATCHPQ 674

  Fly   514 DKPCLNL-----DNCQ--C-----DLSSGQLVCQEDSDMDYSGENSRYVCHILPEQGA------R 560
            |..|:.:     .||.  |     .::..|| ||.|     .||    :||  ||.||      .
  Rat   675 DGSCVCIPGRTGPNCSEGCPSRMFGVNCSQL-CQCD-----PGE----MCH--PETGACVCPPGH 727

  Fly   561 SEAEVRIPDRTGSSNKWMI-----IVGSCAGMIIGVA----------ATIIGIKYYRR 603
            |.|..::    ||...:.|     ::.:..|.:||:|          |..||.:::::
  Rat   728 SGAHCKV----GSQESFTIMPTSPVIHNSLGAVIGIAVLGTLVVALVALFIGYRHWQK 781

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC1NP_001260453.1 None
Pear1NP_001128431.1 EMI 25..93 CDD:284877 23/71 (32%)
EGF_CA 535..580 CDD:304395 10/44 (23%)
Laminin_EGF 620..665 CDD:278482 12/88 (14%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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