DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NimC1 and Megf10

DIOPT Version :9

Sequence 1:NP_001260453.1 Gene:NimC1 / 34816 FlyBaseID:FBgn0259896 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_001094127.1 Gene:Megf10 / 291445 RGDID:735084 Length:1145 Species:Rattus norvegicus


Alignment Length:919 Identity:213/919 - (23%)
Similarity:291/919 - (31%) Gaps:362/919 - (39%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 CLSLSFGTSFAILRHGL-----------NDCSHPESVPYNRKVLKSKLVPFQQYSY-----FHGW 60
            ||    |...::|.|.|           |.|||.||  |:..|.:|...||.|..|     ...|
  Rat     8 CL----GLICSLLCHWLRAASSLNLEDPNVCSHWES--YSVTVQESYPHPFDQIYYTSCTDILNW 66

  Fly    61 VTKYRHQYVYEDETAYR----TVMR--PSCCEGYEGSVENCKPVCRQQCPQHGFCSSPNTCSCNA 119
            ....||:..|  .||||    |:.|  ..||.|:..|.:.|.|.|..:| .||.|.:||||.|..
  Rat    67 FKCTRHRVSY--RTAYRHGEKTMYRRKSQCCPGFYESRDVCVPHCADKC-VHGRCIAPNTCQCEP 128

  Fly   120 GYGGIDCH---------PVCPTVCG-KNEFCDRP--GVCSCQNGYKRTSPSDNCLP-----VCEK 167
            |:||.:|.         |.|.:.|. ||.....|  |.|.|..||:.....|.|..     .|.:
  Rat   129 GWGGTNCSSACDGDHWGPHCSSRCQCKNRALCNPITGACHCAAGYRGWRCEDRCEQGTYGNDCHQ 193

  Fly   168 --ECGHHSFCSE-PGKCECEPGYE-----------KVG----------NGTV---------FPDG 199
              :|.:.:.|.. .|:|.|.|||.           |.|          ||.|         .|.|
  Rat   194 RCQCQNGATCDHITGECRCSPGYTGAFCEDLCPPGKHGPQCEQRCPCQNGGVCHHVTGECSCPSG 258

  Fly   200 YKNNSNGNCSPICP-----KDCGQNSRCVRPGVCE-------CENGYAGD---------DGGTNC 243
            :....   |...||     |:|.|..:|...|.|:       |..||.|:         ..|..|
  Rat   259 WMGTV---CGQPCPEGRFGKNCSQECQCHNGGACDAATGQCHCSPGYTGERCQDECPVGTYGVRC 320

  Fly   244 RPVCSTCPENGLC---------------------LSP--------------------------GV 261
            ...| .|...|.|                     |.|                          |.
  Rat   321 AETC-RCVNGGKCYHVSGTCLCEAGFSGEFCEARLCPEGLYGIKCDKRCPCHLDNTHSCHPMSGE 384

  Fly   262 CVCKPGY--VMRNDLCQP-----HCEK---CSDNAHC-VAPNQCECFPGYESSGADKKCVP---- 311
            |.||||:  :..|:.|.|     .|::   |.:.|.| ....:|.|.||::.:.....| |    
  Rat   385 CGCKPGWSGLYCNETCSPGFYGEACQQICSCQNGADCDSVSGRCACAPGFKGTDCSTPC-PLGRY 448

  Fly   312 --KCSK--GCTNGFCFAP--ETCVCSIGYQMGPNQVCEPK------CSLNCV---HGKC-TSPET 360
              .||.  ||.|....:|  .:|:|..|:......:..|.      |:|.|.   .|.| |...|
  Rat   449 GINCSSRCGCKNDAVCSPVDGSCICKAGWHGVDCSISCPSGTWGFGCNLTCQCLNGGACNTLDGT 513

  Fly   361 CTCDPGYRFK-------------------DNSHHE-CDPI--------------CDSGCSNG--- 388
            |||.||:|.:                   |.||.: |.|.              |||.|:.|   
  Rat   514 CTCAPGWRGEKCEFPCQDGTYGLNCAERCDCSHADGCHPTTGHCRCLPGWSGVHCDSVCAEGRWG 578

  Fly   389 -HCVAPNFC--------------------------ICHDGYQ-----------LNSTNP---VT- 411
             :|..|.:|                          ||..|:.           ::|:.|   :| 
  Rat   579 PNCSLPCYCKNGASCSPDDGICECAPGFRGTTCQRICSPGFYGHRCSQTCPQCVHSSGPCHHITG 643

  Fly   412 ----------SMCQPICKGCQFG-DCVAPNVCECNVGYENINGLCE-LQTTTDSYEYSTTTVELQ 464
                      ::|..:|...:|| :|.  .||.|     ..||.|. :..:...|   ...:...
  Rat   644 LCDCLPGFTGALCNEVCPSGRFGKNCA--GVCTC-----TNNGTCNPIDRSCQCY---PGWIGSD 698

  Fly   465 SSTVDPQLQTSTSEVPHSNCTAGCMCWIEYDG--------MGTFNTAKCAKICVDPQDKPCLNLD 521
            .|...|......:.:...||..|..| ..|||        .|.:.|.:|.   :....|.|..:.
  Rat   699 CSQPCPPAHWGPNCIHTCNCHNGAFC-SAYDGECKCTPGWTGLYCTQRCP---LGFYGKDCALVC 759

  Fly   522 NCQ----CDLSSGQLV---------CQEDSDMDYSGENSRYVCHILPE----------------Q 557
            .||    ||..|||..         |::.......|...|.:|..|..                :
  Rat   760 QCQNGADCDHISGQCTCRTGFMGRHCEQKCPAGTYGYGCRQICDCLNNSTCDHITGTCYCSPGWK 824

  Fly   558 GARSEAEVRIPDRTGSSNKWMIIVGSC----------------AGMIIGVAATIIGIKY------ 600
            |||.       |:.|     :||||:.                .|.|.|:...::.:.:      
  Rat   825 GARC-------DQAG-----VIIVGNLNSLSRTSTALPADSYQIGAIAGIVVLLLVVLFLLALFV 877

  Fly   601 -YRRSTSRR 608
             ||....|:
  Rat   878 IYRHKQKRK 886

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC1NP_001260453.1 None
Megf10NP_001094127.1 EMI 32..99 CDD:400092 26/70 (37%)
EGF_Lam 281..318 CDD:214543 7/36 (19%)
EGF_CA 542..587 CDD:419698 12/44 (27%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 1 1.000 - -
TreeFam 00.000 Not matched by this tool.
32.810

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