DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NimC1 and Stab2

DIOPT Version :9

Sequence 1:NP_001260453.1 Gene:NimC1 / 34816 FlyBaseID:FBgn0259896 Length:622 Species:Drosophila melanogaster
Sequence 2:NP_619614.1 Gene:Stab2 / 192188 MGIID:2178743 Length:2559 Species:Mus musculus


Alignment Length:952 Identity:171/952 - (17%)
Similarity:229/952 - (24%) Gaps:504/952 - (52%)


- Green bases have known domain annotations that are detailed below.


  Fly    80 MRPSCCEGYEG-SVENCKPVCRQQCPQHGFC----SSPNTCSCNAGYGGIDCH---------PVC 130
            ::|.||.|:.| ....|....|..|...|.|    ....:|||.||:.|..|.         |.|
Mouse   104 LQPQCCPGHWGPDCMECPGGARAPCGGRGVCDEGMEGTGSCSCRAGFRGTACENCAAEDVFGPNC 168

  Fly   131 PTVCG-----KNEFCDRPGVCSCQNGYK--------------------RTSPSD--------NCL 162
            ..||.     .|......|.|.|.:.|:                    |.|||.        .||
Mouse   169 SAVCSCVHGVCNSGISGDGTCECLSAYRGPRCDKPIPECAALLCPENSRCSPSSKDETKLQCKCL 233

  Fly   163 P-------------VCEKE-CGHHSFCSEPG----KCECEPGYEKVGNGTV-FPDGYKNNSNGNC 208
            |             .|.|. |..|:.||..|    .|.|:.||:  |:|.| .|......|.|||
Mouse   234 PSYKGDGQTCKPINPCLKNVCHPHASCSYLGPNRHSCVCQKGYQ--GDGQVCLPVDPCQTSYGNC 296

  Fly   209 ---SPICPKD---------------------------------CGQNSRC--VRPG--VCECENG 233
               |.:|..|                                 |.:|:.|  |.||  .|.|:.|
Mouse   297 PTKSTVCRYDGPGQSHCECKEHYRNFVPGVGCSMTDICESKNPCHKNANCSTVSPGQTQCTCQKG 361

  Fly   234 YAGDDGGTNCR-----------------------------------PVCSTCP------------ 251
            |.||  |.||.                                   |:.:..|            
Mouse   362 YVGD--GLNCYGNIMQRLRELNTEPRGMWQGQLTSFISILDRTYAWPLSNLGPFTVLLPSDKGLK 424

  Fly   252 ----------------------------------------------------------------- 251
                                                                             
Mouse   425 GVDVKELLMDKEAARYFVKLHIIAGQMSTEQMYNLDTFYTLTGKSGEIINKDKDNQLKLKLYGSK 489

  Fly   252 -----------ENGLC------------------------------------------------- 256
                       .|||.                                                 
Mouse   490 IVQIIQGNIVASNGLVHILDRAMDKIEPTLESNPQQTIMTMLQPRYGKFRSLLEKTNVGQALEKG 554

  Fly   257 ------------------LSPGVC----------------------------------------- 262
                              ::.||.                                         
Mouse   555 GIDEPYTIFVPSNEALSNMTAGVLDYLLSPEGSRKLLELVRYHIVAFTQLEVATLVSTLHIRSMA 619

  Fly   263 -------VCKPGYVMRNDLCQPHCEKCSDNAHC--------------VAPNQC------------ 294
                   :...|.::.|::.....|..:.|...              :.|::|            
Mouse   620 NQIITFNISSKGQILANNVAVDETEVAAKNGRIYTLTGVLIPPSILPILPHRCNETKREMKLGTC 684

  Fly   295 -----------------------ECFPGYES----SGADKKC-----VPKCSKG--------CTN 319
                                   :||.|..:    .|..:.|     :|:|.||        |..
Mouse   685 VRCFMKNWSKCPTNSEPTAIFTNKCFYGSRAWNLKIGCARYCDVTVEIPRCCKGFFGPDCNPCPG 749

  Fly   320 GF---------CF----APETCVCSIGYQMGPNQVCE------PKC--SLNCVHGKCTS------ 357
            ||         |.    ...||:|..|:|....|.|.      |:|  :..||||.|.:      
Mouse   750 GFMNPCSGNGQCIDGLGGNGTCICEDGFQGSRCQFCSKPNRYGPQCNRTCQCVHGICDNRLDSDG 814

  Fly   358 ---PETCTCDPGYRFKDNSHHECDPICDSGCSNGHCVAPN---FCICHDGYQLNSTNPVTSMCQP 416
               |.||......||.|.....|.|.......:..|...|   .|:|:|||:.:.|  :.|...|
Mouse   815 SCLPGTCREGTAGRFCDKQTSACGPYMQFCHIHATCEYSNETASCVCNDGYEGDGT--LCSKKDP 877

  Fly   417 ICKGCQFGDCVAPNVCECNVGYENINGLCELQTTTDSYE---------YSTTTVELQSSTVDPQL 472
            .......|.| :|| .||            :|.:|.:|.         .....||:.|..:    
Mouse   878 CLGSTSRGGC-SPN-AEC------------IQASTGTYSCVCQRGWTGNGRDCVEINSCLL---- 924

  Fly   473 QTSTSEVPHSNCTAGCMCWIEYDGMGTFNTAKCAK-------------ICVDPQDKPCLNLDNCQ 524
              .:|...|.|.|  |:    |.|.|. |..:|.|             .|::..:| |..|..||
Mouse   925 --PSSGGCHDNAT--CL----YVGPGQ-NECECKKGFRGNGIDCEPIISCLEQIEK-CHPLATCQ 979

  Fly   525 CDLSS-GQLVCQEDSDMDYSGENSRYVCHILPEQGARSEAEV 565
            ..||. ...||||    .|.|.......::|.|....|||.|
Mouse   980 YTLSGVWSCVCQE----GYEGNGVLCYGNVLMELSFLSEAAV 1017

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC1NP_001260453.1 None
Stab2NP_619614.1 EGF_3 254..283 CDD:289699 11/30 (37%)
EGF_3 334..369 CDD:289699 13/36 (36%)
Fasciclin 390..512 CDD:280607 5/121 (4%)
Fasciclin 533..661 CDD:280607 6/127 (5%)
EGF_3 844..872 CDD:289699 8/29 (28%)
EGF_3 928..959 CDD:289699 10/37 (27%)
EGF_3 965..1001 CDD:289699 14/40 (35%)
Fasciclin 1018..1137 CDD:280607 171/952 (18%)
Fasciclin 1156..1273 CDD:280607
EGF_3 1482..1518 CDD:289699
EGF_3 1524..1560 CDD:289699
EGF_3 1566..1602 CDD:289699
Fasciclin 1628..1733 CDD:280607
Fasciclin 1758..1889 CDD:280607
EGF_3 2094..2129 CDD:289699
EGF_3 2135..2172 CDD:289699
Link_Domain 2206..2297 CDD:295393
FAS1 2363..2452 CDD:214719
Interaction with TMSB4X. /evidence=ECO:0000250 2510..2520
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2514..2559
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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