DRSC/TRiP Functional Genomics Resources

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Protein Alignment NimC1 and Stab1

DIOPT Version :10

Sequence 1:NP_001260453.1 Gene:NimC1 / 34816 FlyBaseID:FBgn0259896 Length:622 Species:Drosophila melanogaster
Sequence 2:XP_008769275.1 Gene:Stab1 / 100363145 RGDID:2324745 Length:2630 Species:Rattus norvegicus


Alignment Length:406 Identity:104/406 - (25%)
Similarity:147/406 - (36%) Gaps:115/406 - (28%)


- Green bases have known domain annotations that are detailed below.


  Fly    14 SLSFGTSFAILRHGLNDCSHPESVPYNRKVLKSKLVP-FQQYSYFHGWVTK--------YRHQYV 69
            |..||.| .||..|.:.|.|..:     :.|:.|.|. .:::....|:..:        ||....
  Rat  1304 SALFGLS-GILAVGSSRCLHSHA-----EALREKCVNCTRKFRCTQGFQLQDTPRKSCVYRSGLS 1362

  Fly    70 YEDETAY---RTVMRPSCCEGYEGSVENCKPVCRQQCPQHGFCSSPNTCSCNAGYGGIDCHPVCP 131
            :....:|   :.:..|.||.|:.|::  |:|                   |..|.||        
  Rat  1363 FSRGCSYTCAKKIQVPDCCPGFFGTL--CEP-------------------CPGGLGG-------- 1398

  Fly   132 TVCGKNEFC-DR---PGVCSCQNGYKRTSPSDNCL-----PVCEKECG-HHSFCSE----PGKCE 182
             ||..:..| ||   .|.|.||.|:..|: .:.|.     |.|...|. .|..|.|    .|.|.
  Rat  1399 -VCSGHGQCQDRFLGNGECRCQEGFHGTA-CEMCELGRYGPTCSGVCDCDHGLCQEGLRGNGSCI 1461

  Fly   183 CEPGYEKVGNGTVFPDGYKNNSNGNCSPICPKDCGQNSRCVRPG----VCECENGYAGDDGGTNC 243
            |..|::.:.......|..           |||.|..|:.|::..    ||.|..||:|:  |:.|
  Rat  1462 CNVGWQGLRCDQKITDRQ-----------CPKKCDPNANCIQDSAGIPVCVCAAGYSGN--GSYC 1513

  Fly   244 RPV--CST----CPENGLC--LSPG--VCVCKPGYVMRNDLCQP------HCEKCSDNAHCV--A 290
            ..|  |::    |.....|  ::||  .|.|..||....:|||.      |...|..||.|:  .
  Rat  1514 SEVDPCTSGHGGCSPYANCTKVAPGQRTCTCLDGYTGDGELCQEINSCLVHNGGCHVNAECIPTG 1578

  Fly   291 PNQ--CECFPGYESSGADK-KCVPKCSKGCTNGFCFAP-----------ETCVCSIGYQMGPNQV 341
            |.|  |.|..||...|... |.:..||:  .||.| :|           .||.|...:.:|....
  Rat  1579 PQQVSCNCREGYSGDGIQSCKLLDPCSQ--NNGGC-SPYAVCKSTGDGQRTCSCDSTHTVGDGIT 1640

  Fly   342 CEPKCSLNCVHGKCTS 357
            |..:..|..:..|..|
  Rat  1641 CHGRVGLELLRNKYAS 1656

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimC1NP_001260453.1 None
Stab1XP_008769275.1 FAS1 502..647 CDD:441906
EGF_3 834..863 CDD:463759
EGF_3 918..949 CDD:463759
EGF_3 955..991 CDD:463759
Fasciclin <1100..1180 CDD:396845
Fasciclin 1224..1313 CDD:470649 4/9 (44%)
EGF_3 1519..1555 CDD:463759 9/35 (26%)
EGF_3 1561..1595 CDD:463759 11/33 (33%)
EGF_3 1604..1641 CDD:463759 10/39 (26%)
Fasciclin 1666..1770 CDD:396845
Fasciclin 1796..1926 CDD:396845
EGF_Lam 2037..2082 CDD:238012
EGF_3 2154..2189 CDD:463759
EGF_3 2195..2232 CDD:463759
Link_Domain 2267..2359 CDD:470631
FAS1 2426..2521 CDD:214719
Fasciclin 391..494 CDD:470649
Blue background indicates that the domain is not in the aligned region.

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