DRSC/TRiP Functional Genomics Resources

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Protein Alignment NimB5 and Scarf2

DIOPT Version :10

Sequence 1:NP_609692.3 Gene:NimB5 / 34815 FlyBaseID:FBgn0028936 Length:315 Species:Drosophila melanogaster
Sequence 2:XP_038944006.1 Gene:Scarf2 / 287949 RGDID:1306013 Length:838 Species:Rattus norvegicus


Alignment Length:467 Identity:104/467 - (22%)
Similarity:127/467 - (27%) Gaps:242/467 - (51%)


- Green bases have known domain annotations that are detailed below.


  Fly    43 GMGTYGRGYMENRQ---------LSYNRPGPANFQDPRNVELQPKRREYLIRSHETQSDRGQHKC 98
            |.|:.|.| ...||         |.:..||.|..||     |.|               ||::.|
  Rat     3 GAGSRGAG-PARRQGARGPPLLLLLWLLPGLAAAQD-----LNP---------------RGRNVC 46

  Fly    99 RIWVPPDTVEKYSYPSVIQTDQANRLSLIEVCCTGY-SASRLMGVTVCRAQCGC-QNGSCKIPGE 161
            |.            |.          |.:..||.|: ......|:.||.....| :|..|..|||
  Rat    47 RT------------PG----------SQVLTCCAGWRQLGDECGIAVCEGNSTCSENEVCVRPGE 89

  Fly   162 CECYDGF----------------------------------------VRNDNGDCVFACPLGCQN 186
            |.|..|:                                        .|.....|..||.  ||:
  Rat    90 CRCRHGYFGANCDTKCPRQFWGPDCKERCSCHPHGQCEDVTGQCTCHARRWGARCEHACQ--CQH 152

  Fly   187 GQCY-LDGSCQCDPGY---------KLDETRRFCRP-----ICSSG-----------CGSSP--- 222
            |.|: ..|:|:|:||:         ....|.| |.|     :|.:|           |.|||   
  Rat   153 GTCHPRSGACRCEPGWWGAQCASACYCSATSR-CDPQTGACLCHAGWWGRSCNNQCSCNSSPCEQ 216

  Fly   223 ---RHNCTE-------PEICGCSKGYQLTDDG---CQP-----VCEPDC-----GIG-----GLC 259
               |..|.|       ...|.|.:|.....||   |.|     .|...|     |:|     |.|
  Rat   217 QSGRCQCRERTFGARCDRYCQCFRGRCHPVDGTCACDPGYRGKYCREPCPAGFYGLGCRRRCGQC 281

  Fly   260 KDNNQC--------DCAPGYN-----------------------LRDG-----------VCQAD- 281
            |....|        .|.||:|                       .|||           .|.|. 
  Rat   282 KGQQPCTVVEGRCLTCEPGWNGTKCDQPCATGFYGEGCGHRCPPCRDGHACNHVTGKCTHCNAGW 346

  Fly   282 ----CYQKCNNG--------VC---------VSRNRCLCDPGY---------------------- 303
                |..||:||        ||         ....||||.||.                      
  Rat   347 IGDRCETKCSNGTYGEDCAFVCSDCGSGHCDFQSGRCLCSPGVHGPHCNVTCPAGLHGVDCAQAC 411

  Fly   304 TYHEQSTMCVPV 315
            :.||:|  |.||
  Rat   412 SCHEES--CDPV 421

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimB5NP_609692.3 None
Scarf2XP_038944006.1 PHA03247 <683..837 CDD:223021
Blue background indicates that the domain is not in the aligned region.

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