DRSC/TRiP Functional Genomics Resources

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Protein Alignment NimB5 and Stab2

DIOPT Version :9

Sequence 1:NP_001188802.1 Gene:NimB5 / 34815 FlyBaseID:FBgn0028936 Length:315 Species:Drosophila melanogaster
Sequence 2:XP_038934441.1 Gene:Stab2 / 282580 RGDID:628822 Length:2569 Species:Rattus norvegicus


Alignment Length:279 Identity:74/279 - (26%)
Similarity:96/279 - (34%) Gaps:120/279 - (43%)


- Green bases have known domain annotations that are detailed below.


  Fly   115 VIQTDQANRLSLIEVCCTGYSASRLMGVTVCRAQCG-----CQN-GSCK---IP-GECECYDGFV 169
            ||||.:         ||.||.      :..|:|..|     |.| |.|:   .| |:|.|:.|| 
  Rat  1948 VIQTPR---------CCHGYF------MPDCQACPGGPDTPCNNRGMCRDLYTPMGQCLCHTGF- 1996

  Fly   170 RNDNGDCVFAC----------PLGC-QNGQCYLD------GSCQCDPGYKLDETRRFCR------ 211
               ||.....|          |..| ::|||  |      |.|.|:.|:    |.|||.      
  Rat  1997 ---NGTACELCWHGRFGPDCQPCSCSEHGQC--DEGITGSGECLCETGW----TGRFCDTPTAVI 2052

  Fly   212 PICSSGCGSSPRHNCTEPEICGCSKGYQLTDDGCQPVCEPDCGIGGLCKDNN------------- 263
            |:|:..|  |....|||...|.|:..|:  .||.      .|.:...||.||             
  Rat  2053 PVCTPVC--SVHATCTENNTCVCNLNYE--GDGL------TCTVVDFCKQNNGGCAKVAKCSQKG 2107

  Fly   264 ---QCDCAPGYN-----------LRDGVCQADCYQ------------KC-------NNGV-C--- 291
               .|.|..||.           ..||| ...|::            ||       .:|| |   
  Rat  2108 TQVSCSCKKGYKGDGYSCIEIDPCADGV-NGGCHEHATCRMTGPGKHKCECKSHYVGDGVDCEPE 2171

  Fly   292 -VSRNRCLCDPGYTYHEQS 309
             :..:|||.|.|..:.:.|
  Rat  2172 QLPLDRCLQDNGQCHPDAS 2190

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimB5NP_001188802.1 None
Stab2XP_038934441.1 EGF_CA 254..283 CDD:419698
EGF_3 334..369 CDD:403986
Fasciclin 390..512 CDD:396845
Fasciclin 533..658 CDD:396845
EGF_3 840..868 CDD:403986
EGF_3 881..912 CDD:403986
EGF_3 923..955 CDD:403986
EGF_3 961..997 CDD:403986
Fasciclin 1014..1133 CDD:396845
Fasciclin 1152..1269 CDD:396845
EGF_3 1478..1514 CDD:403986
EGF_3 1520..1556 CDD:403986
EGF_3 1562..1598 CDD:403986
Fasciclin 1629..1729 CDD:396845
Fasciclin 1754..1885 CDD:396845
EGF_CA 2059..2084 CDD:419698 10/34 (29%)
EGF_3 2090..2125 CDD:403986 8/34 (24%)
EGF_3 2131..2168 CDD:403986 8/37 (22%)
Link_Domain 2202..2294 CDD:413401
FAS1 2360..2449 CDD:214719
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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