DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NimB4 and Tnxb

DIOPT Version :9

Sequence 1:NP_788046.1 Gene:NimB4 / 34814 FlyBaseID:FBgn0028542 Length:448 Species:Drosophila melanogaster
Sequence 2:XP_006525248.1 Gene:Tnxb / 81877 MGIID:1932137 Length:4361 Species:Mus musculus


Alignment Length:450 Identity:118/450 - (26%)
Similarity:143/450 - (31%) Gaps:175/450 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    65 SSSTTTRKPYIIPNGLSLPRRGEHPDKCRQEVPAVFFQYDKEVKIVGNSSTNPYMNVIEVCCKGW 129
            |..|.|:.|...|...|.|.......:|                :.|..          ||..|:
Mouse   157 SDPTDTKTPTSSPPSKSCPEDCNDQGRC----------------VRGRC----------VCFPGY 195

  Fly   130 RRYEYDWSQCVPDCGERCQENGFCVAGGKCVCFTDFV------------LNYRNNC--------- 173
            ......|    |.|...||..|.||. |.|||...|.            .|.|..|         
Mouse   196 SGPSCSW----PSCPGDCQGRGRCVK-GVCVCRAGFSGPDCSQRSCPRNCNQRGRCEEGRCVCDP 255

  Fly   174 --------VPTCPLGC-PHGRCYLNGTCQCDKGY------------------ELDGSRKFCQP-- 209
                    |.:||.|| ..|||. ||.|.|:.||                  ..:..|..|.|  
Mouse   256 GYSGEDCGVRSCPRGCSQRGRCE-NGLCVCNPGYSGEDCGVRNCPRGCSQRGRCEDGRCVCDPGY 319

  Fly   210 --------QCNATCGHNEVCLEPGKCSCAEGY------TRGLRESAALGCQPICIPDC-GYGHCV 259
                    .|...||....|:: |:|.|..||      ||            .|..|| |.|.| 
Mouse   320 SGEDCSMRTCPWDCGDGGRCVD-GRCVCWPGYSGEDCSTR------------TCPRDCRGRGRC- 370

  Fly   260 RPNECECFPGFQKRKNGI-TCEGDCYMT--CENGFCANKTTCVCQNGYR-YDKNTTTCLPDC--G 318
            ...||.|..|:.....|: :|.|||...  ||:|      .|||..||. .|.:|..|..||  .
Mouse   371 EDGECICDAGYSGDDCGVRSCPGDCNQRGHCEDG------RCVCWPGYTGADCSTRACPRDCRGR 429

  Fly   319 DNCDNGVCI--------------SPGNCR-----------CFKGYV-------------RNRERC 345
            ..|::|||:              .||:||           |:.||.             |.|.||
Mouse   430 GRCEDGVCVCHAGYSGEDCGVRSCPGDCRGRGNCESGRCVCWPGYTGRDCGTRACPGDCRGRGRC 494

  Fly   346 -EAVCVGGCGFYGKCIAPNVCGCAIVPGPERTYQRCEYGLCNAMGRCRCQVGMTRFIDRC 404
             :..||...||.|:     .||....||..|.:..||.|:      |.|.||.:.  |.|
Mouse   495 VDGRCVCNPGFTGE-----DCGSRRCPGDCRGHGHCENGV------CVCAVGYSG--DDC 541

Known Domains:


Indicated by green bases in alignment.

Software error:

Illegal division by zero at /www/www.flyrnai.org/docroot/cgi-bin/DRSC_prot_align.pl line 591.

For help, please send mail to the webmaster (ritg@hms.harvard.edu), giving this error message and the time and date of the error.

GeneSequenceDomainRegion External IDIdentity
NimB4NP_788046.1 None
TnxbXP_006525248.1 EGF_2 172..200 CDD:285248 7/53 (13%)
EGF_2 203..231 CDD:285248 12/28 (43%)
EGF_Tenascin 236..262 CDD:376143 3/25 (12%)
EGF_Tenascin 267..293 CDD:376143 13/26 (50%)
EGF_Tenascin 298..325 CDD:376143 3/26 (12%)
EGF_Tenascin 329..356 CDD:376143 9/27 (33%)
EGF_Tenascin 360..386 CDD:376143 10/26 (38%)
EGF_2 389..417 CDD:285248 12/33 (36%)
EGF_Tenascin 422..448 CDD:376143 7/25 (28%)
EGF_2 451..479 CDD:285248 7/27 (26%)
EGF_2 482..510 CDD:285248 9/32 (28%)
DSL <498..541 CDD:366627 18/55 (33%)