DRSC/TRiP Functional Genomics Resources

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Protein Alignment NimB4 and stab1

DIOPT Version :9

Sequence 1:NP_788046.1 Gene:NimB4 / 34814 FlyBaseID:FBgn0028542 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_001182543.1 Gene:stab1 / 570626 ZFINID:ZDB-GENE-050208-554 Length:2553 Species:Danio rerio


Alignment Length:537 Identity:129/537 - (24%)
Similarity:176/537 - (32%) Gaps:209/537 - (38%)


- Green bases have known domain annotations that are detailed below.


  Fly    12 SVLLVLFLCVLHGLELQLHEQQLQQQKDEQLRLRAEQRQRELLREHEALQRRLSSSTTTRKPYII 76
            |.||||.|.||...::    |.:..:.|..:.:               |.|...:|.......:.
Zfish     2 SYLLVLGLTVLWTAQI----QAVVNRCDTPVMV---------------LHRTSCTSCAAASAIVC 47

  Fly    77 PNGLSLPRRGEHPDKCRQEVPAVFFQYDKEVKIVGNSSTNPYMNVIEVCCKGWRRYEYDWSQ-CV 140
            |.|..  :..:.||.||..|..    ..::|::.|.|.|...:..::.||.|:      |.. |:
Zfish    48 PRGSK--KVTKTPDSCRYVVEI----GGRQVELSGCSHTCQQVTTVQQCCPGF------WGPLCL 100

  Fly   141 PDC----GERCQENGFCVAGGKCVCFTDFVLNYRNNCVPTCPLGCPHGRCYLNGTCQCDKGYELD 201
            | |    |:.|  |||                      .||..|...     ||||.|::||   
Zfish   101 P-CPSWSGKIC--NGF----------------------GTCESGLSG-----NGTCVCEEGY--- 132

  Fly   202 GSRKFCQPQC---NATCGHNEVCLEPGKCSCAEG-YTRGLRESAALGCQPICI-PDCG------- 254
              ..|....|   ||...|   ||  .:|||..| ...|........|||..| |.|.       
Zfish   133 --AGFACQNCLNENAYGSH---CL--SECSCVNGKCNSGPDGDGKCYCQPPYIGPKCDKVSSSCS 190

  Fly   255 ----YGHCVRPNE----CECFPGFQKRKNGITC-----EGDCYMTCENGFCANKT---TCVCQNG 303
                |.:|...::    |||.||   .|.|..|     ||.|.:   |..|.:|.   .|.|:.|
Zfish   191 SCPLYSYCKGDDDTNAVCECLPG---NKFGQACLDVCPEGTCGI---NAKCLSKDDKYNCECKEG 249

  Fly   304 YRYDKNTTTCLP--DCGDNCDNGVC---------ISPGNCRCFKGYVRNRERCEAVCV------- 350
            :..|..  .|:|  .|..|  ||.|         ||||..:|             ||:       
Zfish   250 FEGDGK--HCIPINPCKTN--NGDCPVTSTTCELISPGKSKC-------------VCLPGMESSD 297

  Fly   351 --GGCGFYGKCIAPNVCGCAIVPGPERTYQRCEYGLCNAMG--RCRC---QV------------- 395
              .||.....|.|.:   |       .|..|||   .|..|  ||||   |:             
Zfish   298 PSKGCTQKSACTASS---C-------HTSARCE---TNGDGSPRCRCGSQQIGDGRRCYGNLMER 349

  Fly   396 ---------------GMTRFIDRCM-------SPDTVTTYASMNPVKVNA--------SLIQEFN 430
                           |..||.::..       .|.|....|..||.:..|        :.:.:.:
Zfish   350 VVELDREGSQAGNLTGSVRFFEQACEFTLSQHGPFTAFIPAGQNPFQTLAGQSSSSILNTVCKNH 414

  Fly   431 LLLGRH-FNLTTLSDMW 446
            |:||:. :::....|||
Zfish   415 LILGQKLYSVLEGKDMW 431

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimB4NP_788046.1 None
stab1NP_001182543.1 EGF_3 227..257 CDD:289699 9/34 (26%)
Fasciclin 379..475 CDD:295423 12/53 (23%)
FAS1 455..630 CDD:225214
Fasciclin 504..630 CDD:280607
EGF_3 819..847 CDD:289699
EGF_3 859..889 CDD:289699
EGF_3 901..932 CDD:289699
EGF_3 938..974 CDD:289699
Fasciclin 1002..1103 CDD:280607
Fasciclin 1125..1242 CDD:295423
EGF_3 1458..1494 CDD:289699
EGF_3 1500..1536 CDD:289699
EGF_3 1542..1578 CDD:289699
Fasciclin 1611..1711 CDD:280607
Fasciclin 1734..1864 CDD:280607
EGF_3 2085..2120 CDD:289699
EGF_3 2128..2163 CDD:289699
Link_domain_TSG_6_like 2198..2290 CDD:239592
Fasciclin 2322..2448 CDD:295423
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.900

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