DRSC/TRiP Functional Genomics Resources

powered by:
logo

back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NimB4 and Tnr

DIOPT Version :9

Sequence 1:NP_788046.1 Gene:NimB4 / 34814 FlyBaseID:FBgn0028542 Length:448 Species:Drosophila melanogaster
Sequence 2:NP_037177.2 Gene:Tnr / 25567 RGDID:3886 Length:1358 Species:Rattus norvegicus


Alignment Length:355 Identity:86/355 - (24%)
Similarity:123/355 - (34%) Gaps:114/355 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly     5 LRSLCLHSVLLVLFLCVLHGLELQLHEQQLQQQKDEQLRLRAEQRQRELLREHEALQRRLSSSTT 69
            |.|||            ..|||... ||.:..:.|.......:      ..:||      |..|.
  Rat    75 LESLC------------SSGLEASA-EQDVSAEDDTLAEYTGQ------TSDHE------SQVTF 114

  Fly    70 TRKPYIIPNGLSLPRRG---EHPDKCRQEVPAVFFQYDKEVKIVGNS-STNPYMNVIEVCCK--- 127
            |.|       ::||::.   ....:..||:.:.....::||.::.:. :||        ||:   
  Rat   115 THK-------INLPKKACPCASSAQVLQELLSRIEMLEREVSVLRDQCNTN--------CCQESA 164

  Fly   128 GWRRYEYDWSQCVPDCGERCQENGFCVAGGKCVCFTDFVLNYRNNC-VPTCPLGCPHGRCYLNGT 191
            ...:.:|     ||.|.   ....|......|:|...:   :..|| .|.|||||......::|.
  Rat   165 ATGQLDY-----VPHCS---GHGNFSFESCGCICNEGW---FGKNCSEPYCPLGCSSRGVCVDGQ 218

  Fly   192 CQCDKGYELDGSRKFCQPQCNATCGHNEVCLEPGKCSCAEGYTRGLRESAALGCQPICIPDCGYG 256
            |.||..|..|...:.   :|...|....:|:: |:|.|.|.||.               .||   
  Rat   219 CICDSEYSGDDCSEL---RCPTDCSSRGLCVD-GECVCEEPYTG---------------EDC--- 261

  Fly   257 HCVRPNECECFPGFQKRKNGITCEGDCYMTCENGFCANKTTCVCQNGYR-YDKNTTTCLPDCG-- 318
                              ..:.|.|||   ...|.||| .||:||.||. .|.:...||..|.  
  Rat   262 ------------------RELRCPGDC---SGKGQCAN-GTCLCQEGYAGEDCSQRRCLNACSGR 304

  Fly   319 DNCDNGVCISPGNCRCFKGYVRNRERCEAV 348
            .:|..|:||      |.:||  ....|.||
  Rat   305 GHCQEGLCI------CEEGY--QGPDCSAV 326

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimB4NP_788046.1 None
TnrNP_037177.2 exchanger_TraA <190..>328 CDD:411343 54/192 (28%)
EGF_Tenascin 203..231 CDD:376143 11/27 (41%)
fn3 328..398 CDD:394996
fn3 416..496 CDD:394996
fn3 507..586 CDD:394996
FN3 595..679 CDD:238020
fn3 687..766 CDD:394996
fn3 776..855 CDD:394996
fn3 865..944 CDD:394996
fn3 954..1026 CDD:394996
FN3 1042..1127 CDD:238020
FReD 1134..1342 CDD:238040
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.910

Return to query results.
Submit another query.