DRSC/TRiP Functional Genomics Resources

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Protein Alignment NimB4 and tnca

DIOPT Version :9

Sequence 1:NP_788046.1 Gene:NimB4 / 34814 FlyBaseID:FBgn0028542 Length:448 Species:Drosophila melanogaster
Sequence 2:XP_021332057.1 Gene:tnca / 100149028 ZFINID:ZDB-GENE-130530-849 Length:2336 Species:Danio rerio


Alignment Length:505 Identity:129/505 - (25%)
Similarity:159/505 - (31%) Gaps:217/505 - (42%)


- Green bases have known domain annotations that are detailed below.


  Fly   108 KIVGNSSTNPYMNVIEVCCKGWRRYEYDWSQCV------------PDCGERCQENGFCVAG---- 156
            ::.|...|.|:       |.|...|..:...||            |||...|.:.|.||.|    
Zfish   151 QVTGAIGTKPF-------CSGHGNYSTETCGCVCAPGWKGLNCTIPDCPGDCSDQGRCVNGKCEC 208

  Fly   157 --------------------------GKCVCFTDFVLNY------RNNCVP-------------- 175
                                      |||||...|...|      .|||:.              
Zfish   209 FEGFTGDDCSTDACLIDCGDNGRCLNGKCVCSEGFSGEYCTESDCLNNCLGRGRCVDGECVCDEP 273

  Fly   176 ---------TCPLGC-PHGRCYLNGTCQCDKGYELDGSRKFCQPQCNA-----TCGHNEVCLEPG 225
                     .||..| ..|||. ||||.||:|        |....|.|     .|.....|:: |
Zfish   274 WTGFDCSELICPNDCYDRGRCE-NGTCYCDRG--------FTGEDCGALACPNDCSGRGFCID-G 328

  Fly   226 KCSCAEGYTRGLRESAALGC-----------QPICI-------PDCG----------YGHCVRPN 262
            :|.|..|||.  .:.::|.|           ..:||       .|||          .|||| ..
Zfish   329 RCVCDAGYTG--EDCSSLTCPNNCNDRGRCSNGVCICEVGFHGEDCGRISCPSNCNNRGHCV-DG 390

  Fly   263 ECECFPGFQKRKNGITC-EGDCYMTCEN-GFCANKTTCVCQNGY-RYDKNTTTCLPDCGDNCDNG 324
            .|||..|||    |..| |..|...|.| |.|.| ..|||..|: ..|....||..||   ...|
Zfish   391 RCECDVGFQ----GHDCSELSCPNNCNNRGRCVN-GQCVCDEGFGSEDCGLKTCPSDC---YGRG 447

  Fly   325 VCISPGNCRCFKGYV-------------RNRERCEA-VCVGGCGFYG------KCIAPNVC---- 365
            .|:. |.|.||..:.             :||.||.| .||...||.|      ||  ||.|    
Zfish   448 QCVD-GECVCFANFAGEDCSELRCPNSCQNRGRCIAGQCVCDEGFTGEDCSQRKC--PNDCLGRG 509

  Fly   366 ----------------GCAI--VPGPERTYQRCEYGLC--------NAM---------------- 388
                            .|::  .||....:.||..|.|        :|.                
Zfish   510 RCVDGRCVCQDGFKGQDCSVPTCPGNCNDHGRCVNGKCVCDEGFFGDACSDRSCLNDCSDVGQCV 574

  Fly   389 -GRCRCQVGMTRFI-DRC--MSPDTVTTYASMNPVKVNAS-----LIQEF 429
             |||.|..|   :| :.|  :||....|...::..|||.:     |:.|:
Zfish   575 DGRCICDEG---YIGEDCSDVSPPEDLTVTDVSTQKVNLTWRNEMLVTEY 621

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimB4NP_788046.1 None
tncaXP_021332057.1 EGF_2 189..217 CDD:285248 8/27 (30%)
EGF_2 316..341 CDD:285248 8/27 (30%)
EGF_2 377..403 CDD:285248 11/30 (37%)
EGF_2 408..434 CDD:285248 10/26 (38%)
EGF_2 470..496 CDD:285248 10/25 (40%)
EGF_2 496..527 CDD:285248 5/32 (16%)
EGF_2 530..558 CDD:285248 6/27 (22%)
FN3 593..679 CDD:238020 8/29 (28%)
fn3 682..763 CDD:306538
fn3 772..852 CDD:306538
FN3 862..947 CDD:238020
FN3 954..1036 CDD:238020
FN3 1087..1171 CDD:238020
fn3 1210..1289 CDD:306538
fn3 1301..1376 CDD:306538
fn3 1392..1464 CDD:306538
FN3 1486..1570 CDD:238020
fn3 1574..1649 CDD:306538
fn3 1665..1740 CDD:306538
fn3 1756..1829 CDD:306538
fn3 1846..1925 CDD:306538
fn3 1935..2013 CDD:306538
fn3 2023..2096 CDD:306538
FReD 2114..2323 CDD:238040
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 1 0.910 - -
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
ZFIN 00.000 Not matched by this tool.
10.910

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