DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment NimB1 and Stab2

DIOPT Version :9

Sequence 1:NP_001260452.1 Gene:NimB1 / 34813 FlyBaseID:FBgn0027929 Length:403 Species:Drosophila melanogaster
Sequence 2:NP_619614.1 Gene:Stab2 / 192188 MGIID:2178743 Length:2559 Species:Mus musculus


Alignment Length:368 Identity:91/368 - (24%)
Similarity:129/368 - (35%) Gaps:126/368 - (34%)


- Green bases have known domain annotations that are detailed below.


  Fly    79 NGSTIYFHRIEVCCAGYRRDPYANECVPDCSA--SSPDN-CRN-GFC----RSPGVCECFAEFVR 135
            |..|:..| :..||:||        .:|||.|  ..||. |.| |.|    :..|.|:|...|  
Mouse  1947 NLCTLVVH-VPRCCSGY--------FMPDCQACPGGPDTPCNNRGMCYDQYKPTGQCQCHTGF-- 2000

  Fly   136 NEHGACIHTC----------PIAC-QHGRC----YLNGTCVCHQNFVLDQETRQFCR------PK 179
              :|.....|          |..| :||:|    ..:|.|:|...:     |.:||.      |.
Mouse  2001 --NGTACELCLPGRFGPDCQPCGCSEHGQCDEGITGSGQCLCEAGW-----TGRFCDAPTVVIPV 2058

  Fly   180 CSQSCGTHEECVAPGQCDCSPGYRRTPDLGCQPVCAPDCGFG-KCVAPNQCECFAGFIKRPNWNV 243
            |..:|..|..|:....|.|:..|.               |.| .|...:.|       |:.|...
Mouse  2059 CIPACSMHATCMENNTCVCNLNYE---------------GDGITCTVVDFC-------KQNNGGC 2101

  Fly   244 CE-AECYLNCENGLCESRYKCHCREGYRYDVNTTSCLPECSDNCGQG-NGVC--------IAPGV 298
            .: |:|   .:.|   ::..|.|::||:.|.:  ||..  .|.|..| ||.|        ..||.
Mouse  2102 AKVAKC---SQKG---TQVSCSCQKGYKGDGH--SCTE--IDPCANGVNGGCHEHATCRMTGPGK 2156

  Fly   299 CRCFRGYEVHGAECRPKCESRFCGKYGRCVAPEICGCGEGQQHCRNGSCDDIEHCSCPSGETHFI 363
            .:|             :|:|.:.|. ||...||........|.  ||.|....:|.    :.||.
Mouse  2157 QKC-------------ECKSHYVGD-GRDCEPEQLPLDRCLQD--NGQCHPDANCV----DLHFQ 2201

  Fly   364 DRCLKA----DRLSQHLNTSEKRKH-----------FNRQLAY 391
            |..:..    ..|.|:..|.:|.|.           :| ||:|
Mouse  2202 DTTVGVFHLRSPLGQYKLTFDKAKEACAKEAASIATYN-QLSY 2243

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
NimB1NP_001260452.1 None
Stab2NP_619614.1 EGF_3 254..283 CDD:289699
EGF_3 334..369 CDD:289699
Fasciclin 390..512 CDD:280607
Fasciclin 533..661 CDD:280607
EGF_3 844..872 CDD:289699
EGF_3 928..959 CDD:289699
EGF_3 965..1001 CDD:289699
Fasciclin 1018..1137 CDD:280607
Fasciclin 1156..1273 CDD:280607
EGF_3 1482..1518 CDD:289699
EGF_3 1524..1560 CDD:289699
EGF_3 1566..1602 CDD:289699
Fasciclin 1628..1733 CDD:280607
Fasciclin 1758..1889 CDD:280607
EGF_3 2094..2129 CDD:289699 11/49 (22%)
EGF_3 2135..2172 CDD:289699 13/50 (26%)
Link_Domain 2206..2297 CDD:295393 9/39 (23%)
FAS1 2363..2452 CDD:214719
Interaction with TMSB4X. /evidence=ECO:0000250 2510..2520
Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 2514..2559
Blue background indicates that the domain is not in the aligned region.


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 00.000 Not matched by this tool.
Domainoid 00.000 Not matched by this tool.
eggNOG 1 0.900 - - E1_KOG1218
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.900

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