DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vajk3 and Ggn

DIOPT Version :9

Sequence 1:NP_609690.1 Gene:Vajk3 / 34812 FlyBaseID:FBgn0028544 Length:277 Species:Drosophila melanogaster
Sequence 2:NP_874353.2 Gene:Ggn / 243897 MGIID:2181461 Length:709 Species:Mus musculus


Alignment Length:243 Identity:58/243 - (23%)
Similarity:77/243 - (31%) Gaps:80/243 - (32%)


- Green bases have known domain annotations that are detailed below.


  Fly    62 GSYGHGYGLTG-YSAPAAVAVGHSGPAIAVGHTAPAVAVHHAPAPYVI---SKQ----------- 111
            |..|.|.|.:| .|.||.:|           ...|       |.||..   ||.           
Mouse   360 GGDGDGEGCSGPPSVPAPLA-----------RALP-------PPPYTTFPGSKPKFDWVSPPDGT 406

  Fly   112 --------------ADVHKTITITK--GIPVP----VHVD----RPYPVVHEKRVPVEVKVPVPQ 152
                          |...:|.|::.  |.|.|    .|..    ||.|.:   ..|.....|.|.
Mouse   407 ERHFRFNGAVGGIGAPRRRTTTLSGPWGSPPPRSGQTHPSSGPRRPTPAL---LAPPMFIFPAPN 468

  Fly   153 PYEVIRKVPVTVKEYVKVPVPVPQPYEVIRHEKVPVHVPVDRPVPVEVPRPYPVPVAK---PYPV 214
            ..|.:|.||.:.::...:|.|.|.|      ...|...|...|.|..:||. |:.||:   |.|.
Mouse   469 NGEPVRPVPPSPQQIPPLPPPPPTP------PATPPPAPPPTPQPPALPRT-PILVARPPTPGPG 526

  Fly   215 YVEKAVNVQVPVHVDRPYPVYVKVPVVSHSVVKHA-PTVAVSSYPVSA 261
            ::|.|:         .|.|.....|..:...|..| |....|..|.:|
Mouse   527 HLESAL---------APTPPSTLSPTAAADQVPAATPATVTSQVPATA 565

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vajk3NP_609690.1 None
GgnNP_874353.2 GGN 38..708 CDD:374018 58/243 (24%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C167841133
Domainoid 00.000 Not matched by this tool.
eggNOG 00.000 Not matched by this tool.
Hieranoid 00.000 Not matched by this tool.
Homologene 00.000 Not matched by this tool.
Inparanoid 00.000 Not matched by this tool.
Isobase 00.000 Not matched by this tool.
OMA 00.000 Not matched by this tool.
OrthoDB 00.000 Not matched by this tool.
OrthoFinder 00.000 Not matched by this tool.
OrthoInspector 00.000 Not matched by this tool.
orthoMCL 00.000 Not matched by this tool.
Panther 00.000 Not matched by this tool.
Phylome 00.000 Not matched by this tool.
RoundUp 00.000 Not matched by this tool.
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 00.000 Not matched by this tool.
10.930

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