DRSC/TRiP Functional Genomics Resources

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Protein Alignment Vajk2 and nahoda

DIOPT Version :10

Sequence 1:NP_609689.3 Gene:Vajk2 / 34811 FlyBaseID:FBgn0032538 Length:270 Species:Drosophila melanogaster
Sequence 2:NP_523815.2 Gene:nahoda / 37641 FlyBaseID:FBgn0034797 Length:1335 Species:Drosophila melanogaster


Alignment Length:162 Identity:37/162 - (22%)
Similarity:44/162 - (27%) Gaps:51/162 - (31%)


- Green bases have known domain annotations that are detailed below.


  Fly    20 SEEAPKKAVETAEPAEKKQEKRGIGHGLGYGYGPSAGGAILGSGIGVGVPVAPAVAELPTQVHTN 84
            ||..||...|.....|.|.|                             |....:|||       
  Fly   404 SEPEPKSEPEPKSEPEPKSE-----------------------------PQPKQLAEL------- 432

  Fly    85 TVVRTVQVPYQVERHVPYPVEKTVTYPVKVPVPQPYPVEKIVHVPVKQIVKVPVEVPQP--YPVE 147
               |....| |.|     |..|:...|...|.|:..|..|....|..:  ..|...|:|  .|..
  Fly   433 ---RAAPEP-QSE-----PEPKSEPEPKSEPEPKSEPEPKSEPEPKSE--PEPKSEPEPKSEPEP 486

  Fly   148 KVIRVPVKIPVDRPYTVHVDKPYPVPVEKPVP 179
            |....|...|  .|.:....|..|.|..:|.|
  Fly   487 KSEPEPTSEP--EPKSAPEPKSEPEPTSEPEP 516

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Vajk2NP_609689.3 rne <69..236 CDD:236766 29/113 (26%)
nahodaNP_523815.2 LPMO_10 <52..162 CDD:460793
EGF_2 207..238 CDD:400365
DOMON_like 255..>297 CDD:472705
DOMON_DOH <593..693 CDD:187689
DoH 766..918 CDD:214768
Blue background indicates that the domain is not in the aligned region.

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