DRSC/TRiP Functional Genomics Resources

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Protein Alignment RBPMS2 and cpo

DIOPT Version :10

Sequence 1:NP_919248.1 Gene:RBPMS2 / 348093 HGNCID:19098 Length:209 Species:Homo sapiens
Sequence 2:NP_001014632.3 Gene:cpo / 45840 FlyBaseID:FBgn0263995 Length:962 Species:Drosophila melanogaster


Alignment Length:183 Identity:92/183 - (50%)
Similarity:113/183 - (61%) Gaps:39/183 - (21%)


- Green bases have known domain annotations that are detailed below.


Human    27 EEEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTAR-----QPVGFVIFDSRAGAEAAKN 86
            |||||||||||||:|.||||||||||.::||||||:|:|::     .|||||.|.:||||||||.
  Fly   438 EEEVRTLFVSGLPMDAKPRELYLLFRAYEGYEGSLLKVTSKNGKTASPVGFVTFHTRAGAEAAKQ 502

Human    87 ALNGIRFDPENPQTLRLEFAKANTKMAKSKLMATPN-------PSNVHPALGAHFIARDPYDLMG 144
            .|.|:||||:.|||:||||||:|||::|.|  ..||       |:.:||..| |         :|
  Fly   503 DLQGVRFDPDMPQTIRLEFAKSNTKVSKPK--PQPNTATTASHPALMHPLTG-H---------LG 555

Human   145 AALIPASPEAWAPYPL-YT----TEL--TPAISHAAFTYPTATAAAAALHAQV 190
            ....|..||.| .:|| |:    .||  ..|:.||...:|       |||.||
  Fly   556 GPFFPGGPELW-HHPLAYSAAAAAELPGAAALQHATLVHP-------ALHPQV 600

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RBPMS2NP_919248.1 Disordered. /evidence=ECO:0000256|SAM:MobiDB-lite 1..24
RRM_RBPMS2 30..105 CDD:410084 54/79 (68%)
Important for homodimerization. /evidence=ECO:0000269|PubMed:25064856 41..51 8/9 (89%)
cpoNP_001014632.3 RRM_cpo 441..523 CDD:410085 56/81 (69%)
RRM_scw1_like 712..819 CDD:409691
Blue background indicates that the domain is not in the aligned region.

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