DRSC/TRiP Functional Genomics Resources

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back to: DIOPT - Ortholog Prediction Tool / DIOPT for Diseases and Traits


Protein Alignment Smg5 and smg5

DIOPT Version :9

Sequence 1:NP_001285914.1 Gene:Smg5 / 34804 FlyBaseID:FBgn0019890 Length:1177 Species:Drosophila melanogaster
Sequence 2:NP_001020094.1 Gene:smg5 / 553261 ZFINID:ZDB-GENE-050913-144 Length:1099 Species:Danio rerio


Alignment Length:1295 Identity:287/1295 - (22%)
Similarity:493/1295 - (38%) Gaps:378/1295 - (29%)


- Green bases have known domain annotations that are detailed below.


  Fly    42 VKDLYRSLYTASKQLDDAKRNVQSVGQLFQHEIEEKRSLLVQLCKQIIFKDYQSVGKKVREVMWR 106
            :|.|||::.....:||.......|..::|:.|....|:.|.:||.:::|......|:|..|::||
Zfish    17 IKRLYRAVVETVHKLDIIISGKSSYREVFKPENISLRNKLRELCVKLMFLHPVDYGRKAEELLWR 81

  Fly   107 RGYYEFIAFVKKNWHKQCQDAATAQENMQKLERFLCAGIFNYKRLSARMEEIYDLDLKYLIDFSI 171
            :.|||.|..:|.|  |:...:.:|.|...:..  |.||:..::.|...::..|.|:|:..||::.
Zfish    82 KVYYEVIQVIKTN--KKHIHSRSALECAYRTH--LIAGVGFFQHLLLYIQSHYQLELQDCIDWTH 142

  Fly   172 ISDGYISDMIGDTMESSHSGTHAVDKSLEAVSFALDTIHSSLLSLGDLHRYFLDFRIDSKLS-IS 235
            ::|    .:||.....|     |..|.:|....|   .|..|:.||||.||      .::|: :.
Zfish   143 VTD----PLIGRKKPVS-----ATSKEMEWAQMA---CHRCLVYLGDLARY------QNELAGVE 189

  Fly   236 KEQVA-KYYLEAFKLNPAIGMAQNQLGTLHYGQNHDLDSTYHYLYSLVCIIPFELSENNLNKLFA 299
            .||:| ::|.:|..:.|.:||..||||||...:.:::::||:||..:....||:.:..||.:||.
Zfish   190 AEQLAERFYHQALSVAPHVGMPFNQLGTLAGSKFYNVEATYYYLRCIQSETPFDGAYGNLKRLFD 254

  Fly   300 KHTE---YLERMDPEKLDFNIEDFFARFYLIVDIFFFDKEV--------PDFNALCHCVLIDLRK 353
            |.::   .:::.:.:||..:.:.......|:|...:....:        .:..:||..||.|...
Zfish   255 KASKMYHQVKKQEMKKLSPSRQRSKDIKRLLVSFMYLQSLLQPKNSLMETELTSLCQSVLEDFNL 319

  Fly   354 IL------------CSQQLR--------VPEPSIFKIVSILFFCLSKLKMINSPKVYSLH-AFLV 397
            :|            .|::..        :|:..|||:|.|....:..||. .:.|.||.. ||.:
Zfish   320 VLFYLPLPAHGSQSASEEEEEHDSVGSVLPDSLIFKMVVICLMVVHSLKR-GASKQYSASIAFTL 383

  Fly   398 AACSDLMDACIVSIEQTILARAQDNERFQAEYEERFQEFDTVVRKSRNEYKNWLAAVGECERKD- 461
            |..|.|::              ..|.|.|||.||  .|.|....::.|        ..:.:.:| 
Zfish   384 ALFSHLVN--------------HVNIRLQAELEE--GESDVPALRTDN--------TDDADARDH 424

  Fly   462 -KKLMPRPHSLKDCSSDSRDSQHSGEEAKTQEAADGDKIGEAVSTRSSDEAKESDLKTPLSCKSK 525
             ...:....:|::.|.:..|.:...|:...::...|:  |..|:|:.:.|.|.|..:..   |.|
Zfish   425 SSAALSEERTLQNGSLEEDDDEEEEEKENGEDEPKGN--GRTVATKKNQEKKRSAEEKQ---KQK 484

  Fly   526 RRGMRLRR-RRRKIAQSDDSSCYDSESELDTDFYSDEEDYTDLSSNFDTDFSDIDAADPGEPCGE 589
            |:..||.. |||:.|..:|      ||:|...|.||||:                          
Zfish   485 RKFSRLSMLRRRRCAHKED------ESDLSEGFESDEEE-------------------------- 517

  Fly   590 ERYAAANYSKKERKAGGGGG---------------------------GG--------VGGVVY-- 617
                      :|.:.|||||                           ||        .||..:  
Zfish   518 ----------EEEEEGGGGGLVDGLGAPRVQMNSLGRDTRKGPLPEDGGWESGSEEDEGGTAFDV 572

  Fly   618 ------------SDNEDVVIEEEKIVYPNEVERR--------------------------SNSQE 644
                        ||.||:...|.....|.:.|..                          |::.:
Zfish   573 ETDSDMNSQESRSDLEDMEDAENAPQQPQQEENEQPQTSREENATPPVTNGPSVSNDASISSNLQ 637

  Fly   645 ADSEELLRSFEVLQL--NFKSA--EDAQSKPVA----PPPVSFSEPPKKLVYRNKYTKINPNIV- 700
            |.|.:|.::....:|  .|.:.  ..|.:.|.|    |.||....||.....||    .:|.|. 
Zfish   638 AMSSQLFQAKRCFRLAPTFSNVLLRPATTTPPAPELNPAPVQEITPPTGETPRN----TSPEIAN 698

  Fly   701 ------------------------------IDCLHNEPTIRALKMLFDWLRINPEILIGCYHSNP 735
                                          ::.|.|:..|:.:|:..||||.|.:|::.|..|:.
Zfish   699 GTNDKDPDSDSEGSEHSNHSFHSEKTLSERLEILTNQGLIQVVKVFLDWLRTNTDIILMCAQSSQ 763

  Fly   736 EFVHKIMKLLNYCNIDIFTRKVYFERDLLTTANVRDSLVELF--DVRANVPLTEDFAFKNFDIFQ 798
            ...:::..|||.    :.......|.|:....:|.:.|.|..  .:...:.|.||.|.::.....
Zfish   764 SLWNRLSVLLNL----LPEGSKILETDIGLNKDVTELLSECEHPSLAQTLLLPEDVALRHLPALS 824

  Fly   799 STQITLDWETIIRERVTPQEESILRIFKMVDFGFFICKQKKFNYRFCVKTRRFTETQKKKQREEK 863
            .....||: |..|..:||.:|.::|:..:..||.|:                             
Zfish   825 VAHRCLDF-TSQRPPLTPLDECVVRVCCIRSFGHFL----------------------------- 859

  Fly   864 KGGGSRRRERRTAPKTNRTKRNEGRTRRYSDRKNGIVRKSYTSNEEKDTVEECRKMPRKGYLRNR 928
                           ||                                        .:|.:.:.
Zfish   860 ---------------TN----------------------------------------LQGNVLHF 869

  Fly   929 NAEKAAAVITSATGTSVAGGTSASTTTNSVIEKLNLQSSSGADEERSEAKSKKCEL---MGKLWL 990
            |.|  |.:.||.                |..|:.||...:.|....:|.::::..|   |.:|.|
Zfish   870 NPE--AGIFTSI----------------SQSEQDNLVQQAKAQFRMAEEEARRNRLMRDMAQLRL 916

  Fly   991 QNEVETLEEELRDSPAHVVMSPFVVVDSKALTEYNGIVKSLVRTKKCIVLIPNAVLNELDDLKKR 1055
            |.||..||..|:...|...|||::|.|:..|.::.|:::.|..:...|::||..|::.||.|||.
Zfish   917 QLEVSQLEGSLQQPKAQSSMSPYLVPDTAVLCQHLGLLRQLAASGCFIIIIPRTVIDGLDMLKKE 981

  Fly  1056 SENVRHVIRWLEQEFKQGNRHLRAQRDN----ESQPLSLLKISRKMDRDASVFLQIAQFCNHLVA 1116
            :...|..||:||.||::|||::|.|:::    |...|      ::.|.:|....:....|..|..
Zfish   982 NSGARDGIRFLETEFRKGNRYIRCQKESGRSFERDKL------KRQDTEAWHLYKTVDSCRQLTG 1040

  Fly  1117 NHADPHVSELQKSVVTYLSGDNLHEKNRQQQNFSYTGILDSIPVRYAQIQS---FYAKFK 1173
            :.:..  .|....:||.|:|.:|.|.:  :::.|....:.::.....::::   ||.::|
Zfish  1041 SQSSG--DEDTAGMVTILTGHSLEELS--ERSASMKAAVQAVAAAGMELKNIIEFYRQWK 1096

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
Smg5NP_001285914.1 EST1 99..222 CDD:287360 36/122 (30%)
EST1_DNA_bind 240..478 CDD:287359 63/272 (23%)
PIN_Smg5 1012..1173 CDD:189054 43/167 (26%)
smg5NP_001020094.1 EST1 74..184 CDD:287360 38/131 (29%)
EST1_DNA_bind 194..>413 CDD:287359 59/235 (25%)
PIN_Smg5 938..1096 CDD:189054 43/167 (26%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Compara 1 0.930 - - C170596652
Domainoid 1 1.000 84 1.000 Domainoid score I8225
eggNOG 1 0.900 - - E1_KOG2162
Hieranoid 1 1.000 - -
Homologene 00.000 Not matched by this tool.
Inparanoid 1 1.050 213 1.000 Inparanoid score I3618
OMA 1 1.010 - - QHG45620
OrthoDB 1 1.010 - - D102776at33208
OrthoFinder 1 1.000 - - FOG0008183
OrthoInspector 1 1.000 - - oto40371
orthoMCL 1 0.900 - - OOG6_107519
Panther 1 1.100 - - LDO PTHR15696
Phylome 1 0.910 - -
RoundUp 1 1.030 - avgDist Average_Evolutionary_Distance R5305
SonicParanoid 00.000 Not matched by this tool.
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
ZFIN 00.000 Not matched by this tool.
1413.800

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