Protein Alignment RpII33 and rpoA

DIOPT Version :9

• Sequence 1: NP_477419.1
• Gene: RpII33 / 34796
• FlyBaseID: FBgn0026373
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_417754.1
• Gene: rpoA / 947794
• ECOCYCID: EG10893
• Length: 329
• Species: Escherichia coli
• Alignment Length: 318
• Identity: 60/318 - (18%)
• Similarity: 108/318 - (33%)
• Gaps: 103/318 - (32%)

  Fly     9 VQITELTDDNVKFVLEDTEL----SVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRIG 69
            |.|.:::..:.|..||..|.    ::.|:|||:.::..|..|:..|:::.         :.|...
E. coli    14 VDIEQVSSTHAKVTLEPLERGFGHTLGNALRRILLSSMPGCAVTEVEIDG---------VLHEYS 69

  Fly    70 LIPLISDDVVE----------RLQYTRDCICL-----DFCPECSVEFTLDVKCSEEQTRHVTTAD 119
            ....:.:|::|          |:| .:|.:.|     ...|..:.:.|.|......:.:|| ...
E. coli    70 TKEGVQEDILEILLNLKGLAVRVQ-GKDEVILTLNKSGIGPVTAADITHDGDVEIVKPQHV-ICH 132

  Fly   120 LKSSNAKV------------LPVTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGK 172
            |...||.:            :|.::|...|||                           ::..|:
E. coli   133 LTDENASISMRIKVQRGRGYVPASTRIHSEED---------------------------ERPIGR 170

  Fly   173 --EHAKWNPTAGVCFEYDPDNSMRHTLYPK------------PDEWPKSEHTELEDDQYEA---- 219
              ..|.::|...:.:..:.....:.|...|            |:|..:...|.|. :|.||
E. coli   171 LLVDACYSPVERIAYNVEAARVEQRTDLDKLVIEMETNGTIDPEEAIRRAATILA-EQLEAFVDL 234

  Fly   220 -----PYNWEAKP----------NKFFFNVESAGALKPENIVVMGVQVLKNKLSNLQT 262
                 |...|.||          :.....|.||..||.|.|..:|..|.:.::..|:|
E. coli   235 RDVRQPEVKEEKPEFDPILLRPVDDLELTVRSANCLKAEAIHYIGDLVQRTEVELLKT 292

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpII33	NP_477419.1	RNAP_II_RPB3	7..267	CDD:132909	60/318 (19%)
		RPOLD	19..261	CDD:214766	56/305 (18%)
rpoA	NP_417754.1	PRK05182	6..316	CDD:235359	60/318 (19%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0202
Hieranoid	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
	1	0.900