Protein Alignment RpII33 and RPC40

DIOPT Version :9

• Sequence 1: NP_477419.1
• Gene: RpII33 / 34796
• FlyBaseID: FBgn0026373
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_015435.1
• Gene: RPC40 / 856226
• SGDID: S000006314
• Length: 335
• Species: Saccharomyces cerevisiae
• Alignment Length: 303
• Identity: 85/303 - (28%)
• Similarity: 136/303 - (44%)
• Gaps: 65/303 - (21%)

  Fly     9 VQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRIGLIPL 73
            |.|:.|......|.|.:.:.|:||:.||:.|:|.|::|.::|....|::|:.||.|||||||:||
Yeast    42 VNISSLDAREANFDLINIDTSIANAFRRIMISEVPSVAAEYVYFFNNTSVIQDEVLAHRIGLVPL 106

  Fly    74 ISDDVVERLQYTRDCICLD--FCPECSVEFTLDVKCSEE--------------QTRHVTTADLKS 122
            ..|.  :.|.:....:..|  |..|.::..:|:|||:..              ...||...|||
Yeast   107 KVDP--DMLTWVDSNLPDDEKFTDENTIVLSLNVKCTRNPDAPKGSTDPKELYNNAHVYARDLK- 168

  Fly   123 SNAKVLPVTSRNQGEEDNEYGE-----SNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAG 182
                     ...||.:...:.:     ::.:||:.|||.|||:.|:|:...|.|.:|||::|.:.
Yeast   169 ---------FEPQGRQSTTFADCPVVPADPDILLAKLRPGQEISLKAHCILGIGGDHAKFSPVST 224

  Fly   183 VCFEYDPDNSMRHTLYPKPDEWPK----------------SEHTELED-------------DQYE 218
            ..:...|..::   |.|...|..:                |:...::|             :::.
Yeast   225 ASYRLLPQINI---LQPIKGESARRFQKCFPPGVIGIDEGSDEAYVKDARKDTVSREVLRYEEFA 286

  Fly   219 APYNWEAKPNKFFFNVESAGALKPENIVVMGVQVLKNKLSNLQ 261
            .........|.|.||||||||:.||.|....|::||||...|:
Yeast   287 DKVKLGRVRNHFIFNVESAGAMTPEEIFFKSVRILKNKAEYLK 329

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpII33	NP_477419.1	RNAP_II_RPB3	7..267	CDD:132909	85/303 (28%)
		RPOLD	19..261	CDD:214766	81/291 (28%)
RPC40	NP_015435.1	RNAP_I_II_AC40	40..330	CDD:132910	85/303 (28%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0202
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
Isobase	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	2	1.810