Protein Alignment RpII33 and ATRPAC42

DIOPT Version :9

• Sequence 1: NP_477419.1
• Gene: RpII33 / 34796
• FlyBaseID: FBgn0026373
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_001320360.1
• Gene: ATRPAC42 / 842377
• AraportID: AT1G60850
• Length: 375
• Species: Arabidopsis thaliana
• Alignment Length: 319
• Identity: 92/319 - (28%)
• Similarity: 137/319 - (42%)
• Gaps: 97/319 - (30%)

  Fly     9 VQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRIGLIPL 73
            |.:..||..:::|.:...:.:.||:.||:.|||.|::||:.|.:..|::|:.||.||||:||||:
plant    76 VDVVSLTKTDMEFDMIGIDAAFANAFRRILIAEVPSMAIEKVLIAYNTSVIIDEVLAHRMGLIPI 140

  Fly    74 ISDDVVERLQYTRDCICLDFCPE-------CSVEFTLDVKCSEEQTR-HVTTADLK-SSNAKVLP 129
            .:|   .||        .::..|       .::.|.|.|||.:.:.| .|.|:||| ..|...|.
plant   141 AAD---PRL--------FEYLSEHDQANEKNTIVFKLHVKCPKNRPRLKVLTSDLKWLPNGSELL 194

  Fly   130 VTSRNQGEEDNEYGE---SND---------------EILIIKLRKGQELKLRAYAKKGFGKEHAK 176
            ..|.|:..:...|..   |.|               :|||.||..|||::|.|:|.||.||.|||
plant   195 RESENKTSKPKTYTSFSCSQDSLPEFANNPITPCDLDILIAKLAPGQEIELEAHAVKGIGKTHAK 259

  Fly   177 WNPTAGVCFEYDPDNSMRHTLYPKPDEWPKSEHTELEDDQYE-----APYN-------------- 222
            |:|.....:...|:..:|               .|:||:..|     .|.|
plant   260 WSPVGTAWYRMHPEVVLR---------------GEVEDELAERLVNVCPQNVFDIEDMGKGKKRA 309

  Fly   223 WEAKP-------------------------NKFFFNVESAGALKPENIVVMGVQVLKNK 256
            ..|:|                         |.|.||:||.|:|.||.:....|::|:.|
plant   310 TVAQPRKCTLCKECVRDDDLVDHVDLGSVKNHFIFNIESTGSLPPEVLFTEAVKILEAK 368

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpII33	NP_477419.1	RNAP_II_RPB3	7..267	CDD:132909	92/319 (29%)
		RPOLD	19..261	CDD:214766	89/309 (29%)
ATRPAC42	NP_001320360.1	RNAP_I_II_AC40	74..375	CDD:132910	92/319 (29%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0202
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D834009at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.820