Protein Alignment RpII33 and RPAC43

DIOPT Version :9

• Sequence 1: NP_477419.1
• Gene: RpII33 / 34796
• FlyBaseID: FBgn0026373
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_176261.1
• Gene: RPAC43 / 842356
• AraportID: AT1G60620
• Length: 385
• Species: Arabidopsis thaliana
• Alignment Length: 319
• Identity: 91/319 - (28%)
• Similarity: 144/319 - (45%)
• Gaps: 78/319 - (24%)

  Fly     9 VQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRIGLIPL 73
            |.:..||:.::.|.:......:||:.||:.:||.|::||:.|.:..|::|:.||.||||:||||:
plant    83 VDVISLTETDMVFDMIGVHAGIANAFRRILLAELPSMAIEKVYVANNTSVIQDEVLAHRLGLIPI 147

  Fly    74 ISDDVVERLQYTRDCICLDFCPE-------CSVEFTLDVKCSE-EQTRHVTTADLK--------- 121
            .:|   .||        .::..|       .::.|.|.|||.: :..|.|.|::||
plant   148 AAD---PRL--------FEYLSENDQPNEKNTIVFKLHVKCLKGDPRRKVLTSELKWLPNGSELI 201

  Fly   122 --SSNAKVLP--VTSRNQGEE------DNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAK 176
              |..:...|  .||.|..::      :|....:..:|||.||..|||::|.|:|.||.||.|||
plant   202 KESGGSTTTPKTYTSFNHSQDSFPEFAENPIRPTLKDILIAKLGPGQEIELEAHAVKGIGKTHAK 266

  Fly   177 WNPTAGVCFEYDPDNSMRHTLYPKPDE-----WPKSEHTELED---------------------- 214
            |:|.|...:...|:..:......|..|     .||... ::||
plant   267 WSPVATAWYRMLPEVVLLKEFEGKHAEELVKVCPKKVF-DIEDMGQGRKRATVARPRDCSLCREC 330

  Fly   215 --DQYEAPYNWEAK------PNKFFFNVESAGALKPENIVVMGVQVLKNKLSNLQTQLS 265
              |..|    ||.:      .|.|.|.:||.|:..||.:....|::|::|...:.::||
plant   331 IRDGVE----WEDQVDLRRVKNHFIFTIESTGSQPPEVLFNEAVKILEDKCERVISELS 385

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpII33	NP_477419.1	RNAP_II_RPB3	7..267	CDD:132909	91/319 (29%)
		RPOLD	19..261	CDD:214766	86/303 (28%)
RPAC43	NP_176261.1	RNAP_I_II_AC40	81..383	CDD:132910	89/315 (28%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0202
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D834009at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	1	1.000	-	-
TreeFam	0	0.000	Not matched by this tool.
	4	3.820