DRSC/TRiP Functional Genomics Resources

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Protein Alignment RpII33 and NRPE3B

DIOPT Version :9

Sequence 1:NP_477419.1 Gene:RpII33 / 34796 FlyBaseID:FBgn0026373 Length:275 Species:Drosophila melanogaster
Sequence 2:NP_179142.1 Gene:NRPE3B / 816032 AraportID:AT2G15400 Length:319 Species:Arabidopsis thaliana


Alignment Length:296 Identity:115/296 - (38%)
Similarity:162/296 - (54%) Gaps:41/296 - (13%)


- Green bases have known domain annotations that are detailed below.


  Fly     3 YANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHR 67
            |...|:|:|.||.||..||.|.:|::|:||:||||.|:|.||:||..|::|.||:||:|||:|.|
plant     6 YQRFPTVKIRELKDDYAKFELRETDVSMANALRRVMISEVPTMAIHLVKIEVNSSVLNDEFIAQR 70

  Fly    68 IGLIPLISDDVVER--LQYTRDCICLDFCPECSVEFTLDVKCSEEQTRHVTTADLKSSNAKVLPV 130
            :.||||.|:..:..  .|...||...:.|..|||||.|..||..:||..||:.||.|::..|.||
plant    71 LSLIPLTSERAMSMRFCQDCEDCNGDEHCEFCSVEFPLSAKCVTDQTLDVTSRDLYSADPTVTPV 135

  Fly   131 --TSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDPD--- 190
              ||.:...:.:|:    ..|:|.|||:||||||:|.|:||.||:||||:|.|.|.:.|:||   
plant   136 DFTSNSSTSDSSEH----KGIIIAKLRRGQELKLKALARKGIGKDHAKWSPAATVTYMYEPDIII 196

  Fly   191 -NSMRHTLYPK---------------------------PDEWPKSEHTELEDDQYEAPYNWEAKP 227
             ..|.:||..:                           |:.:...|....:.:....|...|..|
plant   197 NEEMMNTLTDEEKIDLIESSPTKVFGIDPVTGQVVVVDPEAYTYDEEVIKKAEAMGKPGLIEIHP 261

  Fly   228 --NKFFFNVESAGALKPENIVVMGVQVLKNKLSNLQ 261
              :.|.|.|||.||||...:|:..:.:||.||..::
plant   262 KHDSFVFTVESTGALKASQLVLNAIDILKQKLDAIR 297

Known Domains:


Indicated by green bases in alignment.

GeneSequenceDomainRegion External IDIdentity
RpII33NP_477419.1 RNAP_II_RPB3 7..267 CDD:132909 114/292 (39%)
RPOLD 19..261 CDD:214766 107/278 (38%)
NRPE3BNP_179142.1 RNAP_II_RPB3 10..302 CDD:132909 114/292 (39%)
RPOLD 22..297 CDD:214766 107/278 (38%)


Information from Original Tools:


Tool Simple Score Weighted Score Original Tool Information
BLAST Result Score Score Type Cluster ID
Domainoid 1 1.000 177 1.000 Domainoid score I1078
eggNOG 1 0.900 - - E1_COG0202
Hieranoid 1 1.000 - -
Homologene 1 1.000 - - H2017
Inparanoid 1 1.050 191 1.000 Inparanoid score I1377
OMA 1 1.010 - - QHG53541
OrthoDB 1 1.010 - - D834009at2759
OrthoFinder 1 1.000 - - FOG0004444
OrthoInspector 1 1.000 - - otm2753
orthoMCL 1 0.900 - - OOG6_101363
Panther 1 1.100 - - O PTHR11800
Phylome 1 0.910 - -
SonicParanoid 1 1.000 - - X3150
SwiftOrtho 00.000 Not matched by this tool.
TreeFam 1 0.960 - -
1413.840

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