Protein Alignment RpII33 and polr2c

DIOPT Version :9

• Sequence 1: NP_477419.1
• Gene: RpII33 / 34796
• FlyBaseID: FBgn0026373
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_989124.1
• Gene: polr2c / 394729
• XenbaseID: XB-GENE-998258
• Length: 275
• Species: Xenopus tropicalis
• Alignment Length: 275
• Identity: 188/275 - (68%)
• Similarity: 245/275 - (89%)
• Gaps: 1/275 - (0%)

  Fly     1 MPYANQPSVQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLA 65
            |||||||:|:||||||:||||::|:|:|::|||:|||||||.||:||||||::|||:||.|||:|
 Frog     1 MPYANQPTVRITELTDENVKFIVENTDLAIANSIRRVFIAEVPTIAIDWVQIDANSSVLHDEFIA 65

  Fly    66 HRIGLIPLISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRHVTTADLKSSNAKVLPV 130
            ||:|||||.|||:|::|||:|||.|.:|||||||||||||:|:|:||||||:.||.|:|.:|:||
 Frog    66 HRVGLIPLTSDDIVDKLQYSRDCTCDEFCPECSVEFTLDVRCNEDQTRHVTSRDLVSNNLRVIPV 130

  Fly   131 TSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMRH 195
            |||::..:.|:|.| .|:|||:||||||||:||||||||||||||||||||||.|||||||::||
 Frog   131 TSRSRDNDPNDYVE-QDDILIVKLRKGQELRLRAYAKKGFGKEHAKWNPTAGVAFEYDPDNALRH 194

  Fly   196 TLYPKPDEWPKSEHTELEDDQYEAPYNWEAKPNKFFFNVESAGALKPENIVVMGVQVLKNKLSNL 260
            |:||||:||||||::|:::::.||||:...||.:|::||||.|:|:||.||:..:..||.|||:|
 Frog   195 TVYPKPEEWPKSEYSEIDEEEAEAPYDPTGKPERFYYNVESCGSLRPETIVLSALSGLKKKLSDL 259

  Fly   261 QTQLSHESQNDALAV 275
            |||||||.|:|.|.:
 Frog   260 QTQLSHEIQSDVLTI 274

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpII33	NP_477419.1	RNAP_II_RPB3	7..267	CDD:132909	177/259 (68%)
		RPOLD	19..261	CDD:214766	162/241 (67%)
polr2c	NP_989124.1	RNAP_II_RPB3	7..266	CDD:132909	177/259 (68%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	1	1.000	359	1.000	Domainoid score	I966
eggNOG	0	0.000	Not matched by this tool.
Hieranoid	1	1.000	-	-
Homologene	1	1.000	-	-		H2017
Inparanoid	1	1.050	417	1.000	Inparanoid score	I1774
OMA	1	1.010	-	-		QHG53541
OrthoDB	1	1.010	-	-		D424392at33208
OrthoFinder	1	1.000	-	-		FOG0004444
OrthoInspector	1	1.000	-	-		oto103302
Panther	1	1.100	-	-	LDO	PTHR11800
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	1	1.000	-	-		X3150
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
	11	11.080