Protein Alignment RpII33 and polr1c

DIOPT Version :9

• Sequence 1: NP_477419.1
• Gene: RpII33 / 34796
• FlyBaseID: FBgn0026373
• Length: 275
• Species: Drosophila melanogaster
• Sequence 2: NP_956860.1
• Gene: polr1c / 393538
• ZFINID: ZDB-GENE-040426-1495
• Length: 347
• Species: Danio rerio
• Alignment Length: 298
• Identity: 77/298 - (25%)
• Similarity: 141/298 - (47%)
• Gaps: 50/298 - (16%)

  Fly     9 VQITELTDDNVKFVLEDTELSVANSLRRVFIAETPTLAIDWVQLEANSTVLSDEFLAHRIGLIPL 73
            ::|....::.::|.:...:.::||:.||:.:||.||:||:.|.:..|::::.||.||||:||:|:
Zfish    52 IEIISSDENTLEFDMIGIDAAIANAFRRILLAEVPTMAIEKVFIYNNTSIIQDEILAHRLGLVPI 116

  Fly    74 ISDDVVERLQYTRDCICLDFCPECSVEFTLDVKCSEEQTRHVTTADLK---------SSNAKVLP 129
            .:|   .||...|:....:.....:::..|.|||:........::|.|         |.:.|.||
Zfish   117 KAD---PRLFEYRNSEDQEGTEIDTIQLQLKVKCTRNPRAPKDSSDPKELYLNHMIYSGDIKWLP 178

  Fly   130 VTSRNQGEEDNEYGESNDEILIIKLRKGQELKLRAYAKKGFGKEHAKWNPTAGVCFEYDPDNSMR 194
            :.::.....|.:.|..:.:||:.::|.||||.:..:..||.||:|||::|.|...:...|:.::.
Zfish   179 IGNQADVFADAKIGPVHGDILLAQVRPGQELDIVMHCVKGIGKDHAKFSPVATASYRLLPEITLL 243

  Fly   195 HTLYPKPDEWPKSEH---------TELED------------------------DQYEAPYNWEAK 226
            .|:     |..::|.         .|||:                        |..::.......
Zfish   244 QTI-----EGEQAERLKRCFSPGVIELENVNGRKVAKVVNSRLDTCSREVLRHDDLKSLVKLGRV 303

  Fly   227 PNKFFFNVESAGALKPENIVVMGVQVLKNKLSNLQTQL 264
            .:.|.|:|||.|.|.|:.:|...:.||.:|.....|:|
Zfish   304 RDHFIFSVESTGILPPDVLVTEAINVLMSKCQKFLTEL 341

Known Domains

Gene	Sequence	Domain	Region	External ID	Identity
RpII33	NP_477419.1	RNAP_II_RPB3	7..267	CDD:132909	77/298 (26%)
		RPOLD	19..261	CDD:214766	74/283 (26%)
polr1c	NP_956860.1	RNAP_I_II_AC40	50..340	CDD:132910	75/295 (25%)
		RPOLD	62..337	CDD:214766	74/282 (26%)

Information from Original Tools

Tool	Simple Score	Weighted Score	Original Tool Information
			BLAST Result	Score	Score Type	Cluster ID
Compara	0	0.000	Not matched by this tool.
Domainoid	0	0.000	Not matched by this tool.
eggNOG	1	0.900	-	-		E1_COG0202
Hieranoid	0	0.000	Not matched by this tool.
Homologene	0	0.000	Not matched by this tool.
Inparanoid	0	0.000	Not matched by this tool.
OMA	0	0.000	Not matched by this tool.
OrthoDB	1	1.010	-	-		D834009at2759
OrthoFinder	0	0.000	Not matched by this tool.
OrthoInspector	0	0.000	Not matched by this tool.
orthoMCL	0	0.000	Not matched by this tool.
Panther	0	0.000	Not matched by this tool.
Phylome	1	0.910	-	-
RoundUp	0	0.000	Not matched by this tool.
SonicParanoid	0	0.000	Not matched by this tool.
SwiftOrtho	0	0.000	Not matched by this tool.
TreeFam	0	0.000	Not matched by this tool.
ZFIN	0	0.000	Not matched by this tool.
	3	2.820